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yolandalago / CIRCUST

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Sample-level results #3

Closed lvclark closed 9 months ago

lvclark commented 10 months ago

I just ran through the example code. Where in the results can I see the angle for each sample indicating its position in the circadian cycle? Is it robEstRefG[[2]][[1]][[2]]?

In general it would be very helpful if the functions and their inputs and outputs were documented. A lot of the functions return lists, and these lists could be given names to make it a little more obvious what each item is. This is not only important from a user's perspective, but also a maintainer's, because maintaining the software is difficult if there isn't documentation!

yolandalago commented 9 months ago

Hi Ivclark, The angle for each sample indicates its position in the circadian is given as the matrix: robustSincroRefG[[6]]. Each row of this matrix corresponds to one of the repetitions considered. robEstRefG[[2]][[1]] contains these orders, but, in some occasions, they could be in the inverse order, as the synchronization done in the next step is needed (robustSincroRefG). Thanks for your suggestions. I am working on an improvement code.

lvclark commented 9 months ago

Great, thank you!