yoshiconlab-technical-assistant / analyse-csh-by-md-with-lammps

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Lammpsインストール手順(`mac`用)を整理する #2

Open yoshiconlab-technical-assistant opened 4 weeks ago

yoshiconlab-technical-assistant commented 4 weeks ago

整理する。

yoshiconlab-technical-assistant commented 4 weeks ago

:memo:

yoshida-lab@yoshidakenkyuushitsunoMacBook-Air-2 in.bulk_1 % lmp_serial -h     

Large-scale Atomic/Molecular Massively Parallel Simulator - 29 Sep 2021 - Update 3

Usage example: lmp_serial -var t 300 -echo screen -in in.alloy

List of command line options supported by this LAMMPS executable:

-echo none/screen/log/both  : echoing of input script (-e)
-help                       : print this help message (-h)
-in none/filename           : read input from file or stdin (default) (-i)
-kokkos on/off ...          : turn KOKKOS mode on or off (-k)
-log none/filename          : where to send log output (-l)
-mdi '<mdi flags>'          : pass flags to the MolSSI Driver Interface
-mpicolor color             : which exe in a multi-exe mpirun cmd (-m)
-cite                       : select citation reminder style (-c)
-nocite                     : disable citation reminder (-nc)
-package style ...          : invoke package command (-pk)
-partition size1 size2 ...  : assign partition sizes (-p)
-plog basename              : basename for partition logs (-pl)
-pscreen basename           : basename for partition screens (-ps)
-restart2data rfile dfile ... : convert restart to data file (-r2data)
-restart2dump rfile dgroup dstyle dfile ... 
                            : convert restart to dump file (-r2dump)
-reorder topology-specs     : processor reordering (-r)
-screen none/filename       : where to send screen output (-sc)
-skiprun                    : skip loops in run and minimize (-sr)
-suffix gpu/intel/opt/omp   : style suffix to apply (-sf)
-var varname value          : set index style variable (-v)

OS: Darwin 20.6.0 on x86_64

Compiler: Clang C++ Apple LLVM 13.0.0 (clang-1300.0.29.30) with OpenMP not enabled
C++ standard: C++11
MPI v1.2: LAMMPS MPI STUBS for LAMMPS version 29 Sep 2021

Accelerator configuration:

OPENMP package API: Serial
OPENMP package precision: double

Active compile time flags:

-DLAMMPS_GZIP
-DLAMMPS_PNG
-DLAMMPS_JPEG
-DLAMMPS_SMALLBIG
sizeof(smallint): 32-bit
sizeof(imageint): 32-bit
sizeof(tagint):   32-bit
sizeof(bigint):   64-bit

Installed packages:

ASPHERE BOCS BODY BROWNIAN CG-SDK CLASS2 COLLOID CORESHELL DIFFRACTION DIPOLE 
DPD-BASIC DPD-MESO DPD-REACT DPD-SMOOTH DRUDE EFF EXTRA-COMPUTE EXTRA-DUMP 
EXTRA-FIX EXTRA-MOLECULE EXTRA-PAIR FEP GRANULAR INTERLAYER KIM KSPACE 
MANIFOLD MANYBODY MC MEAM MGPT MISC ML-RANN ML-SNAP MOFFF MOLECULE OPENMP OPT 
ORIENT PERI PLUGIN PTM QEQ QTB REACTION REAXFF REPLICA RIGID SHOCK SMTBQ SPH 
SPIN SRD TALLY UEF YAFF DIELECTRIC ML-IAP PHONON 

List of individual style options included in this LAMMPS executable