Error: 'fetchExtendedChromInfoFromUCSC' is defunct.

your-highness / normR

Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.

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Error: 'fetchExtendedChromInfoFromUCSC' is defunct. #18

Closed arslan9732 closed 2 years ago

arslan9732 commented 2 years ago

I am using normr version ‘1.18.0’. The enrichR() function gave the following error message. Error: 'fetchExtendedChromInfoFromUCSC' is defunct. Use 'getChromInfoFromUCSC' instead. See help("Defunct")

your-highness commented 2 years ago

Thanks for pointing that out! I wonder why this problem was not detected in Bioconductors automatic testing.

The problem is fixed by c084c4b16be3cccd33120912d75eb0a746dda605. Changes are pushed to Bioconductor devel normR v1.19.2 and Bioconductor Release 3.13 normR v1.18.1 . Please give 1 - 2 days for changes to become available in Bioconductor.