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yphsieh / 16S-ITGDB

An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.
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one genbank accession is mapped to two different taxonomies #8

Open billzt opened 10 months ago

billzt commented 10 months ago 
$ grep 'AJ560634' taxa_itgdb_taxa.txt

The result is

AJ560634        k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Morganellaceae; g__Photorhabdus; s__temperata
AJ560634.1.1516 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Morganellaceae; g__Photorhabdus; s__thracensis

According to https://www.ncbi.nlm.nih.gov/nuccore/AJ560634, it should be "Photorhabdus thracensis"

$ grep 'DQ026646' taxa_itgdb_taxa.txt

The result is

DQ026646        k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__lavendulae
DQ026646.1.1528 k__Bacteria; p__Actinobacteriota; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__netropsis

According to https://www.ncbi.nlm.nih.gov/nuccore/DQ026646, it should be "Streptomyces colombiensis"