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ys-zong / MEDFAIR

[ICLR 2023 spotlight] MEDFAIR: Benchmarking Fairness for Medical Imaging
https://ys-zong.github.io/MEDFAIR/
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Covid-CT-MD missing preprocessing dicom to numpy? #9

Closed SteffGroefsema closed 5 months ago

SteffGroefsema commented 5 months ago

First of all, thank you for your elaborate work on the MEDFAIR dataset. However, I think the preprocessing step how to convert the dicom files of the patients to .npy files is missing. Can you share how you build that part of the dataset?

ys-zong commented 5 months ago

Hi, thanks for your interest. I somehow lost the original data preprocessing code for this part, but I think I used pydicom for the conversion. It should be relatively easy if you follow their example to extract the data values.

SteffGroefsema commented 5 months ago

Thank you for your response.