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ysbecca / py-wsi

Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.
https://ysbecca.github.io/programming/2018/05/22/py-wsi.html
GNU General Public License v3.0
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Sample data #32

Closed yelaboratory closed 4 years ago

yelaboratory commented 4 years ago

Hi Rebecca, Your package is very help. Could you provide a pointer for sample data? I used a downloaded .svs. What xml file should I provide? Could you provide an example?

ysbecca commented 4 years ago

Apologies for the late response. You can find example .svs and xml files in the Camelyon dataset (https://camelyon17.grand-challenge.org/Data/)