Traceback (most recent call last):
File "<python-input-1>", line 1, in <module>
yt.load_sample("parthenon_advection")
~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/clm/dev/yt-project/yt/yt/loaders.py", line 1684, in load_sample
return load(loadable_path, **load_kwargs)
File "/Users/clm/dev/yt-project/yt/yt/_maintenance/deprecation.py", line 68, in inner
return func(*args, **kwargs)
File "/Users/clm/dev/yt-project/yt/yt/loaders.py", line 141, in load
return cls(fn, *args, **kwargs)
File "/Users/clm/dev/yt-project/yt/yt/frontends/parthenon/data_structures.py", line 153, in __init__
self._handle = HDF5FileHandler(filename)
~~~~~~~~~~~~~~~^^^^^^^^^^
File "/Users/clm/dev/yt-project/yt/yt/utilities/file_handler.py", line 32, in __init__
self.handle = h5py.File(filename, mode="r")
~~~~~~~~~^^^^^^^^^^^^^^^^^^^^
File "/Users/clm/dev/yt-project/yt/yt/utilities/on_demand_imports.py", line 39, in __call__
raise self.error
File "/Users/clm/dev/yt-project/yt/yt/utilities/on_demand_imports.py", line 77, in inner
return func(self)
File "/Users/clm/dev/yt-project/yt/yt/utilities/on_demand_imports.py", line 305, in File
from h5py import File
ModuleNotFoundError: No module named 'h5py'
Something went wrong while trying to lazy-import h5py. Please make sure that h5py is properly installed.
If the problem persists, please file an issue at https://github.com/yt-project/yt/issues/new
this branch
Traceback (most recent call last):
File "<string>", line 1, in <module>
import yt; yt.load_sample('parthenon_advection')
~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/clm/dev/yt-project/yt/yt/loaders.py", line 1684, in load_sample
return load(loadable_path, **load_kwargs)
File "/Users/clm/dev/yt-project/yt/yt/_maintenance/deprecation.py", line 68, in inner
return func(*args, **kwargs)
File "/Users/clm/dev/yt-project/yt/yt/loaders.py", line 146, in load
raise YTUnidentifiedDataType(_input_fn, *args, **kwargs)
yt.utilities.exceptions.YTUnidentifiedDataType: Could not determine input format from PosixPath('/Users/clm/dev/yt-project/test-data-dir/parthenon_advection/advection_2d.out0.final.phdf')
The following types could not be thorougly checked against your data because their requirements are missing. You may want to inspect this list and check your installation:
- ArepoHDF5Dataset (requires: h5py)
- CFRadialDataset (requires: xarray, pyart)
- CM1Dataset (requires: netCDF4)
- ChimeraDataset (requires: h5py)
- ChollaDataset (requires: h5py)
- ChomboDataset (requires: h5py)
- ChomboPICDataset (requires: h5py)
- EagleDataset (requires: h5py)
- EagleNetworkDataset (requires: h5py)
- EnzoDataset (requires: h5py)
- EnzoDatasetInMemory (requires: h5py)
- EnzoEDataset (requires: h5py, libconf)
- EventsFITSDataset (requires: astropy)
- ExodusIIDataset (requires: netCDF4)
- FITSDataset (requires: astropy)
- FLASHDataset (requires: h5py)
- FLASHParticleDataset (requires: h5py)
- GAMERDataset (requires: h5py)
- GDFDataset (requires: h5py)
- GadgetFOFDataset (requires: h5py)
- GadgetHDF5Dataset (requires: h5py)
- GizmoDataset (requires: h5py)
- MoabHex8Dataset (requires: h5py)
- OWLSDataset (requires: h5py)
- OWLSSubfindDataset (requires: h5py)
- OpenPMDDataset (requires: h5py)
- OpenPMDGroupBasedDataset (requires: h5py)
- Orion2Dataset (requires: h5py)
- ParthenonDataset (requires: h5py)
- PlutoDataset (requires: h5py)
- SkyDataFITSDataset (requires: astropy)
- SpectralCubeFITSDataset (requires: astropy)
- SwiftDataset (requires: h5py)
- YTClumpTreeDataset (requires: h5py)
- YTDataContainerDataset (requires: h5py)
- YTDataLightRayDataset (requires: h5py)
- YTFITSDataset (requires: astropy)
- YTGridDataset (requires: h5py)
- YTHaloCatalogDataset (requires: h5py)
- YTNonspatialDataset (requires: h5py)
- YTProfileDataset (requires: h5py)
- YTSpatialPlotDataset (requires: h5py)
Please make sure you are running a sufficiently recent version of yt.
PR Checklist
[ ] New features are documented, with docstrings and narrative docs
[ ] Adds a test for any bugs fixed. Adds tests for new features.
PR Summary
Fix a small oversight from #4323
reprod: install pooch, pandas, uninstall h5py
error message on main:
this branch
PR Checklist