Open shibuvp opened 7 years ago
i'm getting error command: cs-bwamem [Error] Unknown option 1
my command is spark-submit --master yarn-cluster --driver-memory 2g --executor-memory 4g /opt/cloud-scale-bwamem/target/cloud-scale-bwamem-0.2.2.jar cs-bwamem 1 -R "@RGID:HCC1954LB:HCC1954SM:HCC1954" /Data/HumanBase/hg19/hg19.fa hdfs://master.hdp:8020/genomics/ERR000589_1.filt.fastq hdfs://master.hdp:8020/genomics/ERR000589_2.filt.fastq -oPath hdfs://master.hdp:8020/Files/Test.sam how to fix this?
spark-submit --master yarn-cluster --driver-memory 2g --executor-memory 4g /opt/cloud-scale-bwamem/target/cloud-scale-bwamem-0.2.2.jar cs-bwamem 1 -R "@RGID:HCC1954LB:HCC1954SM:HCC1954" /Data/HumanBase/hg19/hg19.fa hdfs://master.hdp:8020/genomics/ERR000589_1.filt.fastq hdfs://master.hdp:8020/genomics/ERR000589_2.filt.fastq -oPath hdfs://master.hdp:8020/Files/Test.sam
i'm getting error command: cs-bwamem [Error] Unknown option 1
my command is
spark-submit --master yarn-cluster --driver-memory 2g --executor-memory 4g /opt/cloud-scale-bwamem/target/cloud-scale-bwamem-0.2.2.jar cs-bwamem 1 -R "@RGID:HCC1954LB:HCC1954SM:HCC1954" /Data/HumanBase/hg19/hg19.fa hdfs://master.hdp:8020/genomics/ERR000589_1.filt.fastq hdfs://master.hdp:8020/genomics/ERR000589_2.filt.fastq -oPath hdfs://master.hdp:8020/Files/Test.samhow to fix this?