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yu-lab-vt / AQuA2

Activity Quantification and Analysis for molecular spatiotemporal signals
GNU General Public License v2.0
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landmark feature from AQuA in AQuA2? #7

Closed kaitlin-s closed 3 months ago

kaitlin-s commented 3 months ago

Hi! I'm wondering if its possible to include the landmark feature from AQuA in AQuA2?

Thanks,

Kaitlin

XuelongMi commented 3 months ago

Hi, Kaitlin,

AQuA2 has included the landmark feature. To enable it, in the final step of GUI ("feature extraction" step), the "Network features" should be selected. image

kaitlin-s commented 3 months ago

Hi Xuelong,

Thanks for your reply! I was wondering mainly about these features from AQuA, when I select "Network features" I still don't see these:

Screenshot (145)

In AQuA2 I only see Landmark - event average distance and Landmark - event minimum distance as landmark features.

Thanks for your help,

Kaitlin

XuelongMi commented 3 months ago

Hi kaitlin,

I've modified the code and uploaded it to Github. Now the newest version could satisfy your demand. Previously, to make AQuA2 compatible with 3D data, I simplified that feature. Now for 2D data, landmark features will use the code from AQuA.

XuelongMi commented 1 month ago

Sorry, there is one bug about landmark features, and the newest code repair it. Last month when I call the 2D landmark analysis back, the input variables are not correct and will make the landmark features wrong. To rerun the analysis, you don’t need to rerun all the steps. You can just update the code, load the previous .mat file, and then only run the feature extraction step.