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yu-lab-vt / AQuA2

Activity Quantification and Analysis for molecular spatiotemporal signals
GNU General Public License v2.0
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landmark feature from AQuA in AQuA2? #7

Closed kaitlin-s closed 3 weeks ago

kaitlin-s commented 1 month ago

Hi! I'm wondering if its possible to include the landmark feature from AQuA in AQuA2?

Thanks,

Kaitlin

XuelongMi commented 1 month ago

Hi, Kaitlin,

AQuA2 has included the landmark feature. To enable it, in the final step of GUI ("feature extraction" step), the "Network features" should be selected. image

kaitlin-s commented 1 month ago

Hi Xuelong,

Thanks for your reply! I was wondering mainly about these features from AQuA, when I select "Network features" I still don't see these:

Screenshot (145)

In AQuA2 I only see Landmark - event average distance and Landmark - event minimum distance as landmark features.

Thanks for your help,

Kaitlin

XuelongMi commented 1 month ago

Hi kaitlin,

I've modified the code and uploaded it to Github. Now the newest version could satisfy your demand. Previously, to make AQuA2 compatible with 3D data, I simplified that feature. Now for 2D data, landmark features will use the code from AQuA.