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yuch7 / cwlexec

A new open source tool to run CWL workflows on LSF
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Cannot use Array type with inputs #29

Closed drjrm3 closed 5 years ago

drjrm3 commented 5 years ago

For tools which require a flag before each item in an array we can use the methods described in The array-inputs tutorial. This works well for cwltool, but does not seem to get passed to the baseCommand in cwlexec.

Attached is an example command 'foo' which takes multiple --INPUT files and cats them all to a single --OUTPUT file. With cwltool it works but with cwlexec it does not pass any of the --INPUT flags.

MultiInputError.tar.gz

skeeey commented 5 years ago

This should be a bug, we will work on it

skeeey commented 5 years ago

Fixed at 4485b0b