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yuch7 / cwlexec

A new open source tool to run CWL workflows on LSF
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Incorrect Null evaluation of file #38

Closed drjrm3 closed 5 years ago

drjrm3 commented 5 years ago

37 seems to be resolved now with my minimal example but when I ran my larger workflow again it still failed. After dissecting each piece I found that an unrelated parameter seems to be causing this same error.

When I change the example CLT / WF from #37 and allow the CLT to have an optional boolean and then edit the WF to interpret the boolean as z: {valueFrom: $(true)} I get the same std error I did in #37. However, the new z parameter is (I think) completely unrelated to the parameter involved with the std error.

UndefinedVariableError2.5.tar.gz

skeeey commented 5 years ago

This is because I evaluate the stdout/stderr at a wrong phase, I should evaluate them after the inputs were handled