I have a simple workflow in which I have 2 inputs, one is type: File, and the other is an array of files. I want to run a command in which each of the files in the array are used against the single input file from input1.
When I run cwltool it performs as expected. It runs in serial each file in the array against the single input1.
When I run cwlexec it gives me no errors or message, and the job immediately terminates.
I have another workflow that has designated output files created from the program, but bedtools prints its outputs to stdout. The other workflow works well, but this fails.
Thanks,
Dennis
I have a simple workflow in which I have 2 inputs, one is type: File, and the other is an array of files. I want to run a command in which each of the files in the array are used against the single input file from input1. When I run cwltool it performs as expected. It runs in serial each file in the array against the single input1. When I run cwlexec it gives me no errors or message, and the job immediately terminates.
the tool is:
And the workflow is:
The .yml file:
I have another workflow that has designated output files created from the program, but bedtools prints its outputs to stdout. The other workflow works well, but this fails. Thanks, Dennis