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yuch7 / cwlexec

A new open source tool to run CWL workflows on LSF
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$(inputs.other_file.nameroot) evaluates to Null upon file scatter #6

Closed drjrm3 closed 6 years ago

drjrm3 commented 6 years ago

We have a simple example where we are trying to concatenate english.txt with french.txt, german.txt, and spanish.txt via scatter using $(inputs.other_file.nameroot) in the CommandLineTool being scattered. This works as desired in cwltool, but in CWLEXEC, we get no output files and the following information in debug mode (found also in the 'outfile.txt', attached):

16:15:47.191 default [main] DEBUG c.i.s.c.e.util.evaluator.JSEvaluator - Evaluated js expression "$(inputs.other_file.nameroot)" to A null object

NullJSObjectError.tar.gz

liuboxa commented 6 years ago

This issue has the same reason with #7