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yuchaojiang / TRIPOD

Nonparametric Interrogation of Transcriptional Regulation in Single-Cell RNA and Chromatin Accessibility Multiomic Data
GNU General Public License v3.0
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About ct=read.table('celltype_skin.txt', header=T, sep='t') and the fragments <- "./SNARE_seq/fragments.sort.bed.gz" file #13

Closed goodstudy28 closed 2 days ago

goodstudy28 commented 3 days ago

Hi TRIPOD team, paper looked really cool! So I wanted to try and run on some of my own data, but I'm having some difficulty, can you tell me how the ct=read.table('celltype_skin.txt', header=T, sep='t') file and the fragments <- "./SNARE_seq/fragments.sort.bed.gz" file are obtained? Thanks!

yuchaojiang commented 2 days ago

I believe these are processed by ourselves. Please email me yuchaojiang at tamu dot edu and I can share a copy.