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yuedongyang / SPIDER2

MIT License
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Errors with pred_pssm.py #3

Open mohassan12 opened 3 years ago

mohassan12 commented 3 years ago

Getting the following error in pred_pssm.py Traceback (most recent call last): File "../misc/pred_pssm.py", line 253, in main([list_nn,ball], x, 'spd') File "../misc/pred_pssm.py", line 205, in main pred1(list_params, aa, pssm, outfile0) File "../misc/pred_pssm.py", line 217, in pred1 res1 = run_iter(dict_nn, input_feature, aa, ofile) File "../misc/pred_pssm.py", line 158, in run_iter nn = dict_nn[x] File "/usr/lib64/python2.7/site-packages/numpy/lib/npyio.py", line 262, in getitem pickle_kwargs=self.pickle_kwargs) File "/usr/lib64/python2.7/site-packages/numpy/lib/format.py", line 696, in read_array raise ValueError("Object arrays cannot be loaded when " ValueError: Object arrays cannot be loaded when allow_pickle=False

miss77jun commented 3 years ago

pred_pssm.py L140 should be modified to 

return numpy.load(nn_filename, allow_pickle=True)