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yueyu1030 / SumGNN

[Bioinformatics 2021] This is the repo for the paper `SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summarization'.
https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btab207/6189090
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questions about the codes #3

Closed yzf-code closed 2 years ago

yzf-code commented 3 years ago
  1. The TWOSIDES source link maybe wrong? Probably this one. http://snap.stanford.edu/biodata/datasets/10017/10017-ChChSe-Decagon.html
  2. In the BioSNAP dataset you have processed,including train.txt, test.txt, dev.txt and relations2hop.txt, I only found the biomedical entities(drug, protein,gene) number given in digital form.What's the correspondence between these biomedical entities numbers and real entities? You only give the correspondence about drugbank dataset.
yueyu1030 commented 3 years ago

Thanks for your suggestion! The mapping file can be found at https://drive.google.com/file/d/1C3ZF77QvdzI3eL9sjLkBr3aytzET4JGj/view?usp=sharing.