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yuezhengfu / CNPS.cycle

This is an R package for element cycle analysis using metagenomic data.
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Error running: Host_relative_Group results #3

Open NieNomi opened 3 weeks ago

NieNomi commented 3 weeks ago

CNPS.cycle package is a convenient and useful tool for analyzing metagenome sequencing data that can help identify genes and taxa involved in element cycle metabolic pathways. I have installed CNPS.cycle package and imported my data as required. However, this error occurs when I run to get the results of Host_relative_Group.
Looking forward to your reply! 592D0B6399269D7C508A11F6A30210C9 屏幕截图 2024-06-12 144613

yuezhengfu commented 1 week ago

Hello, NieNomi I'm sorry for the late response. This is because I have been working on modifying some features of the CNPS.cycle package recently. The newly uploaded CNPS.cycle package will offer more comprehensive statistical analysis. I recommend reinstalling the package to enjoy the latest features. To address the issue you encountered, first, you should check if you can run the example data normally. If so, I suspect that your uploaded data might be incomplete. Based on the screenshot you provided, I noticed that your data has exactly 1,048,575 rows, which is the maximum row limit in Excel. Did you open your data with Excel and then save it as an Excel file? This could have caused your data to be truncated. Therefore, I suggest saving your data in a .txt format, which might resolve the issue. I look forward to your positive feedback.

CNPS.cycle package is a convenient and useful tool for analyzing metagenome sequencing data that can help identify genes and taxa involved in element cycle metabolic pathways. I have installed CNPS.cycle package and imported my data as required. However, this error occurs when I run to get the results of Host_relative_Group. Looking forward to your reply! 592D0B6399269D7C508A11F6A30210C9 屏幕截图 2024-06-12 144613

NieNomi commented 1 week ago

Hello！Thank you for your reply and help! Errors are indeed caused by incomplete data. According to your suggestion, I have solved the problem and successfully obtained the Host_relative_Group results. I also have installed the latest CNPS.cycle package you uploaded. It can be seen that you have put a lot of effort into making CNPS.cycle package more comprehensive and convenient, and look forward to yours success！