base version without Rstudio

[che25]

I yufree,

your docker image works really well and I am very grateful to you for putting it together.

I have this issue: I would like to set up a workflow with minimal user interaction and run it via singularity on the server. The whole RStudio frontend is not required for this. I could not find the Dockerfile with which you generated your base image otherwise I might have attempted to edit it. But could you provide me with a version that is more like the r-base version (i.e. no Rstudio, no shiny, etc) on which I could build, or your base Dockerfile?

Many thanks

[yufree]

You can change the base image to FROM rocker/r-base for this Dockerfile and add other packages in this Dockerfile. I used FROM rocker/verse as my base image and you might need to add some dependence for rocker/r-base to install other packages.

[che25]

Is it the docker file in xcmsrocker/CBverse_xcms/Dockerfile?

On 20 Sep 2021, at 16:20, Miao YU @.***> wrote:

You can change the base image to FROM rocker/r-base for this Dockerfile https://github.com/yufree/xcmsrocker/blob/master/CBverse_xcms/Dockerfile and add other packages in this Dockerfile https://github.com/yufree/xcmsrocker/blob/master/verse_xcms/Dockerfile. I used FROM rocker/rstudio as my base image and you might need to add some dependence for rocker/r-base to install other packages.

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[yufree]

Yes.