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yufu2015 / PC-CHiP

Pan-cancer quantitative histopathology analysis using deep learning
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How to draw the heatmap? #7

Open PLMMZY67 opened 2 years ago

PLMMZY67 commented 2 years ago

HELLO.I see many heatmap in the supplementary figures,may i ask you how to draw it?

yufu2015 commented 2 years ago

Hi! not sure which heatmap you are referring to. Can you give me the number of the supp figure?

Le mar. 1 mars 2022 à 03:28, PLMMZY67 @.***> a écrit :

HELLO.I see many heatmap in the supplementary figures,may i ask you how to draw it?

You can view, comment on, or merge this pull request online at:

https://github.com/yufu2015/PC-CHiP/pull/7 Commit Summary

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PLMMZY67 commented 2 years ago

Thank you very much for your reply.Actually i want to ask for the'probability map',like part e in Fig.1 in the article,there is a predicted tumor probability of each tile shown in the middle.I want to know how to locate each tiles in the whole WSI.Hope to recieve your reply.

yufu2015 @.***> 于2022年3月1日周二 16:49写道：

Hi! not sure which heatmap you are referring to. Can you give me the number of the supp figure?

Le mar. 1 mars 2022 à 03:28, PLMMZY67 @.***> a écrit :

HELLO.I see many heatmap in the supplementary figures,may i ask you how to draw it?

You can view, comment on, or merge this pull request online at:

https://github.com/yufu2015/PC-CHiP/pull/7 Commit Summary

Merge pull request #5 from yufu2015/master

Merge branch 'master' of github.com:yufu2015/PC-CHiP

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yufuowkin commented 2 years ago

Hi, the position depends on how you tile the whole slide, you can generate the tumor probability for tiles from any given position with the right size.