Closed AshleyNDoerfler closed 1 year ago
The readme claims that older and newer versions of the packages listed should work for the code, but I am finding issues with using a newer version of VGAM.
I also had to edit the execution command slightly to get it to work:
Rscript HPTAD.R \ -i ../example \ -o test \ -p foo \ -C ../example/ChIP/foo.narrowPeak \ -c 19 \ -f ../example/features/foo_F_GC_M_MboI_40Kb_el.txt \ -x ../example/filter/foo_filterlist.bed \ -b 40000
The readme claims that older and newer versions of the packages listed should work for the code, but I am finding issues with using a newer version of VGAM.
I also had to edit the execution command slightly to get it to work:
Rscript HPTAD.R \ -i ../example \ -o test \ -p foo \ -C ../example/ChIP/foo.narrowPeak \ -c 19 \ -f ../example/features/foo_F_GC_M_MboI_40Kb_el.txt \ -x ../example/filter/foo_filterlist.bed \ -b 40000