yuqiyuqitan SPACEc issues

yuqiyuqitan / SPACEc

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issues

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Run container on High Performance computing cluster (HPC)

#60 ryao-mdanderson closed 5 days ago
3
Windows installation instructions

#59 bobbyni819 closed 1 week ago
3
Compare Spatial context maps and motifs

#58 Zach-Sten closed 1 week ago
1
omp_set_nested routine deprecated

#57 dtejadam opened 3 weeks ago
0
Not able to download data from Dryad

#56 pranjalvaidya closed 3 weeks ago
1
sp.hf.downscale_tissue does not recognize the tissue pieces

#55 dtejadam closed 1 month ago
4
Mac M1/M2 error

#54 fotisn7 opened 2 months ago
1
import issue: Windows x64 ModuleNotFoundError: No module named '_libvips'

#53 yuqiyuqitan closed 3 months ago
1
FYI: this project requires CUDA 11

#52 aowenson-imm closed 3 months ago
3
`import spacec` took over 60mins but eventually caused kernel Python 3.9 die on M1

#51 denvercal1234GitHub closed 3 months ago
1
`pytest` produced Interrupted: 42 errors during collection

#50 denvercal1234GitHub opened 3 months ago
1
werkzeug error on Apple M1/M2/M3 when loading SPACEc

#49 TKempchen closed 3 months ago
0
fastremap error when installing SPACEc on Apple M1/M2/M3

#48 TKempchen closed 3 months ago
0
Installation for Mac M1

#47 denvercal1234GitHub closed 3 months ago
3
Using StarDist cell segmentation within SPACEc?

#46 denvercal1234GitHub closed 3 months ago
4
Tutorial page coming soon?

#45 denvercal1234GitHub closed 3 months ago
3
update docker files

#44 TKempchen closed 3 months ago
1
Update links

#43 mgbckr closed 4 months ago
0
Add badges

#42 mgbckr closed 4 months ago
0
Add libvips-dev to readthedocs.yml

#41 mgbckr closed 4 months ago
0
Set Python version

#40 mgbckr closed 4 months ago
0
Fix pre-commit requirements

#39 mgbckr closed 4 months ago
0
Fix for setup on Apple M1/M2 silicon

#38 mgbckr closed 3 months ago
0
Fix2

#37 TKempchen closed 4 months ago
0
Fix2

#36 TKempchen closed 4 months ago
0
Quick fixes

#35 TKempchen closed 4 months ago
1
adding updates as discussed yesterday

#34 TKempchen closed 4 months ago
0
Update LICENSE.txt

#33 TKempchen opened 4 months ago
0
CPU vs GPU installation

#32 yuqiyuqitan closed 3 months ago
0
Change text font size for create_pie_charts

#31 yuqiyuqitan opened 4 months ago
0
Up to date tim

#30 mgbckr closed 4 months ago
0
Duplicated code in filter_interactions

#29 TKempchen closed 3 months ago
0
Docstring tim

#28 TKempchen closed 7 months ago
0
Adding docstring to functions

#27 TKempchen closed 8 months ago
0
Release TODOs

#26 mgbckr closed 3 months ago
0
Unstable Github Actions

#25 mgbckr closed 3 months ago
2
Docs

#24 mgbckr closed 8 months ago
0
M1/M2 fix is hacky

#23 mgbckr opened 8 months ago
0
Mesmer Segmentation works has issues with 32bit files users should reduce to 16 or 8bit for segmentation input

#22 TKempchen closed 4 months ago
0
Docs

#21 mgbckr closed 8 months ago
0
Notebook 4 is missing the code to generate barycentric coordinate system

#20 TKempchen closed 3 months ago
0
`sp.tl.identify_interactions` fails on Windows due to `joblib` issue in Github action tests

#19 mgbckr opened 9 months ago
3
`scanpy` is currently fixed on 1.9.6 since tests don't run otherwise

#18 mgbckr closed 3 months ago
0
Make tests run via Github Actions

#17 mgbckr closed 8 months ago
3
Python 3.11 does not work because of DeepCell which requires Python <= 3.10

#16 mgbckr closed 3 months ago
0
functions that need to get rid of the module note

#15 yuqiyuqitan closed 9 months ago
1
Add Setup.ipynb

#14 TKempchen closed 3 months ago
1
We have an unclear thresholding procedure for the CN maps

#13 TKempchen closed 9 months ago
0
Remove R scripts from Repo

#12 TKempchen closed 9 months ago
0
generalize "pl_membrane_ch" and "tl_cell_segmentation" function

#11 TKempchen closed 9 months ago
0