Open Anna-pro opened 2 years ago
Hi Anna, I'm not associated with ezTree, but ran into this issue while trying it out.
For me, the problem was caused by having the list file in a different directory than ezTree itself.
e.g. -list test_example/list_species' didn't work, but copying
list_speciesto the ezTree location did (
-list list_species`).
I see your issue is from 2 years ago, but I'm posting this in the hopes that may save future users some time down the line.
Hello, I received an error for each line in the script with the infinite repetitions: print() on closed filehandle OUT at /path/ezTree/ezTree line 291, line 4.
"Predicting genes for" and "Running hmmscan on " finished without any issues.
What might went wrong? What does this error mean? How can I force script to work? The main aim for me is extracting marker genes from my fasta files. Thank you! Looking forward for your fast response. Best, Anna