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yyoshiaki / VIRTUS

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
https://github.com/yyoshiaki/VIRTUS/wiki
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TypeError: Passing a set as an indexer is not supported. Use a list instead. #35

Closed patrick-douglas closed 1 year ago

patrick-douglas commented 1 year ago

Dear @yyoshiaki I'm trying to run VIRTUS_wrapper.py, but I'm getting the following error, how can I fix it?

.....
    }
}INFO Final process status is success
Traceback (most recent call last):
  File "/home/me/VIRTUS2/bin//VIRTUS_wrapper.py", line 198, in <module>
    df_cov = df_cov.loc[list_index]
  File "/usr/local/lib/python3.10/dist-packages/pandas/core/indexing.py", line 1091, in __getitem__
    check_dict_or_set_indexers(key)
  File "/usr/local/lib/python3.10/dist-packages/pandas/core/indexing.py", line 2611, in check_dict_or_set_indexers
    raise TypeError(
TypeError: Passing a set as an indexer is not supported. Use a list instead.

All best Patrick~

patrick-douglas commented 1 year ago

Sorry, my mistake the issue should be at VIRTUS2 repo