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yyoshiaki / VIRTUS2

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
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IGV #13

Closed km-2021 closed 1 year ago

km-2021 commented 1 year ago

Is it possible to visualize the virusAligned.filtered.sortedByCoord.out.bam file in IGV? I created a bai file in samtools and tried to read it, but it gives an error.

yyoshiaki commented 1 year ago

It may be possible to show virusAligned.filtered.sortedByCoord.out.bam in IGV, but I have not tried it. I usually re-align reads with an index for the viruses that have been hit.