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yyoshiaki / VIRTUS2

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
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Absolute path #7

Closed km-2021 closed 2 years ago

km-2021 commented 2 years ago

Hi,

I specified an absolute path with "DIR_INDEX_ROOT=/absolute/path/to/dir/of/indeices/created", but I get an error "invalid path to VIRTUS. try to change --VIRTUSDir to the absolute path." in running Virtus_wrapper.py. How to fix it?

yyoshiaki commented 2 years ago

https://github.com/yyoshiaki/VIRTUS2/blob/master/wrapper/run.sh

As this script, can you specify the path?

km-2021 commented 2 years ago

Thanks,

This error is solved. However, I get an error: ModuleNotFoundError: No module named 'scattermap'.

yyoshiaki commented 2 years ago

Did you move VIRTUS_wrapper.py alone? If so, VIRTUS_wrapper.py and scattermap.py should be in the same directory.

km-2021 commented 2 years ago

Thanks,

The pipeline worked well. Thanks a lot!