Closed cjvegame closed 6 years ago
Hey - The usage is actually
perl nrify_GOtable.pl mygotable
where mygotable is a tab-delimited file (NB: not a comma-delimited csv) with two columns as you say (gene_id GO123 , or it could be geneID GO123;GO345;GO567)
this might sound silly but could you also check your line endings in the input file? They should be unix-type ("\n"), not DOS.
Misha
Hello there,
I was trying to use your perl file: nrify_GOtable.pl line but I get this error.
syntax error at nrify_GOtable.pl line 10, near "<" Excessively long <> operator at nrify_GOtable.pl line 21.
I think it might be that I might be using it wrong: 1) I have to run the command in my terminal as: perl nrify_GOtable.pl line [file name] 2) The file has to be a two column csv. file: gene_id and Go term?
Is this correct?