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z0on / GO_MWU

Rank-based Gene Ontology analysis of gene expression data
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clarification #17

Closed rachel2024 closed 1 year ago

z0on commented 1 year ago

yes indeed, red means positive log-fold-change of [more than chance number of] genes in that GO term.

On Mon, Feb 6, 2023 at 2:13 PM rachel2024 @.***> wrote:

I used the log2FoldChange for the GO_MWU analysis. The log2FoldChange is calculated from DESeq2, if log2FoldChange is >0 (the FoldChange=sampleA/sampleB), and the log2FoldChange was directly import to the GO_MWU analysis, will the GO category corresponding to the transcript and this log2FoldChange colored as red in the plot?

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