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zaccharieramzi / fastmri-reproducible-benchmark

Try several methods for MRI reconstruction on the fastmri dataset. Home to the XPDNet, runner-up of the 2020 fastMRI challenge.
https://fastmri.org/leaderboards
MIT License
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Regarding sessions of OASIS3 dataset to be downloaded #159

Closed jainspoornima closed 2 years ago

jainspoornima commented 2 years ago

I have been downloading the OASIS3 dataset for experimenting with the PD-net architecture. I tried downloading using the XNAT desktop client, but it needs some server URL which I don't have. I have gained access to the dataset through access request. Another way to download is through the scripts given here -https://github.com/NrgXnat/oasis-scripts. I wished to ask which files should I download from here for reproducing PD-net results. Thanks.

zaccharieramzi commented 2 years ago

Hi @jainspoornima ,

Thanks for using this repo! So I remember downloading a zip for the whole dataset on this page: https://central.xnat.org/app/action/ProjectDownloadAction/project/OASIS3. Is it not available to you?

In any case, I agree that for reproducibility's sake it's better to have the clear list of sessions that need to be downloaded to reproduce the results. Therefore, I included it in a csv that will soon be on master, but you can already find it here. Hope this will help.

Please tell me if you have a hard time reproducing the results.

zaccharieramzi commented 2 years ago

It is now on master.

Therefore I am closing this issue, but feel free to reopen it.

jainspoornima commented 2 years ago

Thanks for your prompt reply sir. The zip download is getting stuck at 'preparing to download' message for me. And with the csv file you provided, I tried downloading using sh/wget.sh download files but 0% files are getting downloaded - [image: image.png] I am using google colab for the purpose. Could you possibly help with this?

Thanks and regards, Poornima Jain

On Sat, Nov 27, 2021 at 1:57 PM Zaccharie Ramzi @.***> wrote:

Closed #159 https://github.com/zaccharieramzi/fastmri-reproducible-benchmark/issues/159 .

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zaccharieramzi commented 2 years ago

Unfortunately I won't be able to help straight away, as I am currently writing my thesis. I suggest you try to contact the xnat support who may be able to help you more efficiently.

jainspoornima commented 2 years ago

Okay sir, thanks for your reply.

Regards, Poornima

On Sat, Nov 27, 2021 at 6:29 PM Zaccharie Ramzi @.***> wrote:

Unfortunately I won't be able to help straight away, as I am currently writing my thesis. I suggest you try to contact the xnat support who may be able to help you more efficiently.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/zaccharieramzi/fastmri-reproducible-benchmark/issues/159#issuecomment-980594159, or unsubscribe https://github.com/notifications/unsubscribe-auth/AFBWEOAHL54U33TDZD2LX7TUODI4TANCNFSM5I34GAMQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.