Open nevrome opened 3 years ago
You got the ones I already knew.
I guess could consider: https://github.com/ANGSD/NgsRelate
as "from low coverage Next Generation Sequencing (NGS) data by using genotype likelihoods instead of called genotypes" - not specfically aDNA but I suspect is related
New tag and new items added. Feel free to suggest any additional updates or new entries here.
Hi all, sorry for the delay of my reaction.
I know about a few more methods, but haven't used them myself... Here is a list with relevant webpages:
IBSrelate (coverage >=2x): https://onlinelibrary.wiley.com/doi/full/10.1111/mec.14954 http://www.popgen.dk/software/index.php/IBSrelate
SEEKIN: https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007021 https://github.com/chaolongwang/SEEKIN/
Hope it can help!
Le ven. 23 juil. 2021 à 13:13, Zack Batist @.***> a écrit :
New tag and new items added. Feel free to suggest any additional updates or new entries here.
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/zackbatist/open-archaeo/issues/25#issuecomment-885568050, or unsubscribe https://github.com/notifications/unsubscribe-auth/ANLDDPCX7PI6Z7XIQZAMZW3TZFFG3ANCNFSM5A3R2RKA .
I suggest to add a new tag
aDNA kinship
. This is a topic with obvious relevance for archaeology. Papers about biological kinship are usually developed in close collaboration of geneticists and archaeologists.The following software tools could be added to this tag:
@jfy133 Do you know other software tools that fall into this category? Maybe you, @MaiteRivollat? I know you worked extensively on this topic and probably dived deeply into the available software tools.