zadorlab / KinBot

Automated reaction pathway search for gas-phase molecules
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Chirality #23

Closed juditzador closed 4 years ago

juditzador commented 4 years ago

I implemented a new attribute for StationaryPoint, self.chiral. It's an n-atom long vector, one array element for each atom. If the atom is not a chiral center, the value is zero, otherwise it's +1 or -1 based on handedness. It is working for atoms with exactly 4 ligands. I tested it on wells, but it should work on TSs as well.