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zadorlab / KinBot

Automated reaction pathway search for gas-phase molecules
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Installation issue #54

Closed kfir4444 closed 1 year ago

kfir4444 commented 1 year ago

Hey, I can see that for some reason the installation changed, but the instructions did not. When trying to install the binary using conda I get the following:

$ conda install -c rdkit -c openbabel -c zadorlab kinbot python=3.8
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: - 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed                                                                                                                                                                                                    

UnsatisfiableError: The following specifications were found to be incompatible with a past
explicit spec that is not an explicit spec in this operation (python):

  - kinbot -> matplotlib -> python[version='2.6.*|2.7.*|3.4.*|3.5.*|3.6.*|>=3.10,<3.11.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0|>=3.8|>=3.7|>=3.6|>=3.5|>=3.4,<3.5.0a0']
  - kinbot -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0']
  - python=3.8

The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package readline conflicts for:
certifi -> python[version='>=3.9,<3.10.0a0'] -> readline[version='7.*|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.2,<9.0a0']
readline
kinbot -> python[version='>=2.7,<2.8.0a0'] -> readline[version='7.*|>=7.0,<8.0a0|>=8.0,<9.0a0']
python=3.8 -> readline[version='>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.2,<9.0a0']
pip -> python[version='>=3.8,<3.9.0a0'] -> readline[version='7.*|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.2,<9.0a0']
sqlite -> readline[version='>=8.0,<9.0a0']
setuptools -> python[version='>=3.8,<3.9.0a0'] -> readline[version='7.*|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.2,<9.0a0']
wheel -> python -> readline[version='7.*|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.2,<9.0a0']

Package sqlite conflicts for:
python=3.8 -> sqlite[version='>=3.30.0,<4.0a0|>=3.30.1,<4.0a0|>=3.31.1,<4.0a0|>=3.32.3,<4.0a0|>=3.33.0,<4.0a0|>=3.35.4,<4.0a0|>=3.36.0,<4.0a0|>=3.38.0,<4.0a0|>=3.39.3,<4.0a0|>=3.40.0,<4.0a0']
pip -> python[version='>=3.8,<3.9.0a0'] -> sqlite[version='>=3.20.1,<4.0a0|>=3.22.0,<4.0a0|>=3.23.1,<4.0a0|>=3.24.0,<4.0a0|>=3.25.2,<4.0a0|>=3.25.3,<4.0a0|>=3.26.0,<4.0a0|>=3.27.2,<4.0a0|>=3.29.0,<4.0a0|>=3.30.0,<4.0a0|>=3.30.1,<4.0a0|>=3.31.1,<4.0a0|>=3.32.3,<4.0a0|>=3.33.0,<4.0a0|>=3.35.4,<4.0a0|>=3.36.0,<4.0a0|>=3.38.0,<4.0a0|>=3.39.3,<4.0a0|>=3.40.0,<4.0a0|>=3.37.2,<4.0a0|>=3.39.2,<4.0a0|>=3.38.3,<4.0a0|>=3.38.2,<4.0a0']
sqlite
setuptools -> python[version='>=3.8,<3.9.0a0'] -> sqlite[version='>=3.20.1,<4.0a0|>=3.22.0,<4.0a0|>=3.23.1,<4.0a0|>=3.24.0,<4.0a0|>=3.25.2,<4.0a0|>=3.25.3,<4.0a0|>=3.26.0,<4.0a0|>=3.27.2,<4.0a0|>=3.29.0,<4.0a0|>=3.30.0,<4.0a0|>=3.30.1,<4.0a0|>=3.31.1,<4.0a0|>=3.32.3,<4.0a0|>=3.33.0,<4.0a0|>=3.35.4,<4.0a0|>=3.36.0,<4.0a0|>=3.38.0,<4.0a0|>=3.39.3,<4.0a0|>=3.40.0,<4.0a0|>=3.37.2,<4.0a0|>=3.39.2,<4.0a0|>=3.38.3,<4.0a0|>=3.38.2,<4.0a0']
kinbot -> python[version='>=2.7,<2.8.0a0'] -> sqlite[version='>=3.20.1,<4.0a0|>=3.22.0,<4.0a0|>=3.23.1,<4.0a0|>=3.25.2,<4.0a0|>=3.25.3,<4.0a0|>=3.27.2,<4.0a0|>=3.29.0,<4.0a0|>=3.30.0,<4.0a0|>=3.31.1,<4.0a0|>=3.35.4,<4.0a0|>=3.40.0,<4.0a0|>=3.33.0,<4.0a0|>=3.30.1,<4.0a0|>=3.26.0,<4.0a0|>=3.24.0,<4.0a0']
wheel -> python -> sqlite[version='>=3.20.1,<4.0a0|>=3.22.0,<4.0a0|>=3.23.1,<4.0a0|>=3.24.0,<4.0a0|>=3.25.2,<4.0a0|>=3.25.3,<4.0a0|>=3.26.0,<4.0a0|>=3.27.2,<4.0a0|>=3.29.0,<4.0a0|>=3.30.0,<4.0a0|>=3.30.1,<4.0a0|>=3.31.1,<4.0a0|>=3.32.3,<4.0a0|>=3.33.0,<4.0a0|>=3.35.4,<4.0a0|>=3.36.0,<4.0a0|>=3.37.2,<4.0a0|>=3.38.0,<4.0a0|>=3.39.3,<4.0a0|>=3.40.0,<4.0a0|>=3.39.2,<4.0a0|>=3.38.3,<4.0a0|>=3.38.2,<4.0a0']
certifi -> python[version='>=3.9,<3.10.0a0'] -> sqlite[version='>=3.20.1,<4.0a0|>=3.22.0,<4.0a0|>=3.23.1,<4.0a0|>=3.24.0,<4.0a0|>=3.25.2,<4.0a0|>=3.25.3,<4.0a0|>=3.26.0,<4.0a0|>=3.27.2,<4.0a0|>=3.29.0,<4.0a0|>=3.30.0,<4.0a0|>=3.30.1,<4.0a0|>=3.31.1,<4.0a0|>=3.32.3,<4.0a0|>=3.33.0,<4.0a0|>=3.35.4,<4.0a0|>=3.36.0,<4.0a0|>=3.38.0,<4.0a0|>=3.38.2,<4.0a0|>=3.38.3,<4.0a0|>=3.39.2,<4.0a0|>=3.39.3,<4.0a0|>=3.40.0,<4.0a0|>=3.37.2,<4.0a0']

Package _openmp_mutex conflicts for:
openssl -> libgcc-ng[version='>=7.5.0'] -> _openmp_mutex[version='>=4.5']
_openmp_mutex
zlib -> libgcc-ng[version='>=11.2.0'] -> _openmp_mutex[version='>=4.5']
libffi -> libgcc-ng[version='>=11.2.0'] -> _openmp_mutex[version='>=4.5']
readline -> libgcc-ng[version='>=11.2.0'] -> _openmp_mutex[version='>=4.5']
libuuid -> libgcc-ng[version='>=11.2.0'] -> _openmp_mutex[version='>=4.5']
xz -> libgcc-ng[version='>=11.2.0'] -> _openmp_mutex[version='>=4.5']
tk -> libgcc-ng[version='>=7.5.0'] -> _openmp_mutex[version='>=4.5']
libgcc-ng -> _openmp_mutex[version='>=4.5']
python=3.8 -> libgcc-ng[version='>=11.2.0'] -> _openmp_mutex[version='>=4.5']
ncurses -> libgcc-ng[version='>=11.2.0'] -> _openmp_mutex[version='>=4.5']
bzip2 -> libgcc-ng[version='>=7.3.0'] -> _openmp_mutex[version='>=4.5']
sqlite -> libgcc-ng[version='>=11.2.0'] -> _openmp_mutex[version='>=4.5']

Package openssl conflicts for:
kinbot -> python[version='>=2.7,<2.8.0a0'] -> openssl[version='1.0.*|>=1.0.2m,<1.0.3a|>=1.0.2n,<1.0.3a|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1b,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.0.2l,<1.0.3a|>=1.1.1k,<1.1.2a|>=1.1.1j,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1e,<1.1.2a']
openssl
python=3.8 -> openssl[version='>=1.1.1d,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1j,<1.1.2a|>=1.1.1k,<1.1.2a|>=1.1.1l,<1.1.2a|>=1.1.1n,<1.1.2a|>=1.1.1q,<1.1.2a|>=1.1.1s,<1.1.2a']
pip -> python[version='>=3.8,<3.9.0a0'] -> openssl[version='1.0.*|>=1.0.2m,<1.0.3a|>=1.0.2n,<1.0.3a|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1b,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1j,<1.1.2a|>=1.1.1k,<1.1.2a|>=1.1.1l,<1.1.2a|>=1.1.1n,<1.1.2a|>=1.1.1q,<1.1.2a|>=1.1.1s,<1.1.2a|>=1.1.1m,<1.1.2a|>=1.1.1o,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.0.2l,<1.0.3a']
wheel -> python -> openssl[version='1.0.*|>=1.0.2m,<1.0.3a|>=1.0.2n,<1.0.3a|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1b,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.1.1j,<1.1.2a|>=1.1.1k,<1.1.2a|>=1.1.1l,<1.1.2a|>=1.1.1m,<1.1.2a|>=1.1.1n,<1.1.2a|>=1.1.1q,<1.1.2a|>=1.1.1s,<1.1.2a|>=1.1.1o,<1.1.2a|>=1.0.2l,<1.0.3a']
certifi -> python[version='>=3.9,<3.10.0a0'] -> openssl[version='1.0.*|>=1.0.2m,<1.0.3a|>=1.0.2n,<1.0.3a|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1b,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.1.1j,<1.1.2a|>=1.1.1k,<1.1.2a|>=1.1.1l,<1.1.2a|>=1.1.1n,<1.1.2a|>=1.1.1o,<1.1.2a|>=1.1.1q,<1.1.2a|>=1.1.1s,<1.1.2a|>=1.1.1m,<1.1.2a|>=1.0.2l,<1.0.3a']
setuptools -> python[version='>=3.8,<3.9.0a0'] -> openssl[version='1.0.*|>=1.0.2m,<1.0.3a|>=1.0.2n,<1.0.3a|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1b,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1j,<1.1.2a|>=1.1.1k,<1.1.2a|>=1.1.1l,<1.1.2a|>=1.1.1n,<1.1.2a|>=1.1.1q,<1.1.2a|>=1.1.1s,<1.1.2a|>=1.1.1m,<1.1.2a|>=1.1.1o,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.0.2l,<1.0.3a']

Package wheel conflicts for:
python=3.8 -> pip -> wheel
wheel
pip -> wheel

Package bzip2 conflicts for:
bzip2
certifi -> python[version='>=3.10,<3.11.0a0'] -> bzip2[version='>=1.0.8,<2.0a0']
kinbot -> openbabel -> bzip2[version='>=1.0.6,<2.0a0|>=1.0.8,<2.0a0']
pip -> python[version='>=3.10,<3.11.0a0'] -> bzip2[version='>=1.0.8,<2.0a0']
wheel -> python -> bzip2[version='>=1.0.8,<2.0a0']
setuptools -> python[version='>=3.10,<3.11.0a0'] -> bzip2[version='>=1.0.8,<2.0a0']

Package ca-certificates conflicts for:
openssl -> ca-certificates
pip -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
python=3.8 -> openssl[version='>=1.1.1s,<1.1.2a'] -> ca-certificates
ca-certificates
certifi -> python -> ca-certificates
setuptools -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
wheel -> python -> ca-certificates
kinbot -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates

Package ld_impl_linux-64 conflicts for:
ld_impl_linux-64
kinbot -> python[version='>=3.6,<3.7.0a0'] -> ld_impl_linux-64
wheel -> python -> ld_impl_linux-64[version='>=2.36.1']
pip -> python[version='>=3.8,<3.9.0a0'] -> ld_impl_linux-64[version='>=2.36.1']
setuptools -> python[version='>=3.8,<3.9.0a0'] -> ld_impl_linux-64[version='>=2.36.1']
python=3.8 -> ld_impl_linux-64
certifi -> python[version='>=3.9,<3.10.0a0'] -> ld_impl_linux-64[version='>=2.36.1']

Package libgcc-ng conflicts for:
openssl -> libgcc-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
setuptools -> python[version='>=3.8,<3.9.0a0'] -> libgcc-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
certifi -> python[version='>=3.9,<3.10.0a0'] -> libgcc-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
libgcc-ng
xz -> libgcc-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
python=3.8 -> zlib[version='>=1.2.11,<1.3.0a0'] -> libgcc-ng[version='>=7.2.0']
bzip2 -> libgcc-ng[version='>=7.2.0|>=7.3.0']
tk -> zlib[version='>=1.2.12,<1.3.0a0'] -> libgcc-ng[version='>=11.2.0']
kinbot -> matplotlib -> libgcc-ng[version='>=11.2.0|>=7.2.0|>=7.3.0|>=7.5.0']
sqlite -> libgcc-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
ncurses -> libgcc-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
readline -> libgcc-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
tk -> libgcc-ng[version='>=7.2.0|>=7.3.0|>=7.5.0']
libffi -> libgcc-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
wheel -> python -> libgcc-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
zlib -> libgcc-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
pip -> python[version='>=3.8,<3.9.0a0'] -> libgcc-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
python=3.8 -> libgcc-ng[version='>=11.2.0|>=7.5.0|>=7.3.0']
libuuid -> libgcc-ng[version='>=11.2.0|>=7.5.0|>=7.2.0']

Package tzdata conflicts for:
setuptools -> python[version='>=3.10,<3.11.0a0'] -> tzdata
certifi -> python[version='>=3.9,<3.10.0a0'] -> tzdata
tzdata
wheel -> python -> tzdata
pip -> python[version='>=3.10,<3.11.0a0'] -> tzdata

Package tk conflicts for:
certifi -> python[version='>=3.9,<3.10.0a0'] -> tk[version='8.6.*|>=8.6.10,<8.7.0a0|>=8.6.11,<8.7.0a0|>=8.6.12,<8.7.0a0|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0']
pip -> python[version='>=3.8,<3.9.0a0'] -> tk[version='8.6.*|>=8.6.10,<8.7.0a0|>=8.6.11,<8.7.0a0|>=8.6.12,<8.7.0a0|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0']
wheel -> python -> tk[version='8.6.*|>=8.6.10,<8.7.0a0|>=8.6.11,<8.7.0a0|>=8.6.12,<8.7.0a0|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0']
python=3.8 -> tk[version='>=8.6.10,<8.7.0a0|>=8.6.11,<8.7.0a0|>=8.6.12,<8.7.0a0|>=8.6.8,<8.7.0a0']
kinbot -> matplotlib -> tk[version='8.6.*|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0|>=8.6.12,<8.7.0a0|>=8.6.10,<8.7.0a0']
tk
setuptools -> python[version='>=3.8,<3.9.0a0'] -> tk[version='8.6.*|>=8.6.10,<8.7.0a0|>=8.6.11,<8.7.0a0|>=8.6.12,<8.7.0a0|>=8.6.8,<8.7.0a0|>=8.6.7,<8.7.0a0']

Package libuuid conflicts for:
certifi -> python[version='>=3.10,<3.11.0a0'] -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0']
wheel -> python -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0']
libuuid
pip -> python[version='>=3.10,<3.11.0a0'] -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0']
setuptools -> python[version='>=3.10,<3.11.0a0'] -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0']

Package _libgcc_mutex conflicts for:
libgomp -> _libgcc_mutex==0.1=main
tk -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='*|0.1',build=main]
openssl -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='*|0.1',build=main]
python=3.8 -> libgcc-ng[version='>=11.2.0'] -> _libgcc_mutex[version='*|0.1',build=main]
ncurses -> libgcc-ng[version='>=11.2.0'] -> _libgcc_mutex[version='*|0.1',build=main]
libgcc-ng -> _libgcc_mutex[version='*|0.1',build=main]
libffi -> libgcc-ng[version='>=11.2.0'] -> _libgcc_mutex[version='*|0.1',build=main]
_libgcc_mutex
zlib -> libgcc-ng[version='>=11.2.0'] -> _libgcc_mutex[version='*|0.1',build=main]
readline -> libgcc-ng[version='>=11.2.0'] -> _libgcc_mutex[version='*|0.1',build=main]
libuuid -> libgcc-ng[version='>=11.2.0'] -> _libgcc_mutex[version='*|0.1',build=main]
xz -> libgcc-ng[version='>=11.2.0'] -> _libgcc_mutex[version='*|0.1',build=main]
bzip2 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='*|0.1',build=main]
sqlite -> libgcc-ng[version='>=11.2.0'] -> _libgcc_mutex[version='*|0.1',build=main]

Package libedit conflicts for:
python=3.8 -> sqlite[version='>=3.33.0,<4.0a0'] -> libedit[version='>=3.1.20181209,<3.2.0a0|>=3.1.20191231,<3.2.0a0']
sqlite -> libedit[version='>=3.1.20170329,<3.2.0a0|>=3.1.20181209,<3.2.0a0|>=3.1.20191231,<3.2.0a0']

Package xz conflicts for:
setuptools -> python[version='>=3.8,<3.9.0a0'] -> xz[version='>=5.2.3,<6.0a0|>=5.2.4,<6.0a0|>=5.2.5,<6.0a0|>=5.2.6,<6.0a0']
xz
kinbot -> python[version='>=3.6,<3.7.0a0'] -> xz[version='>=5.2.3,<6.0a0|>=5.2.4,<6.0a0|>=5.2.5,<6.0a0']
certifi -> python[version='>=3.9,<3.10.0a0'] -> xz[version='>=5.2.3,<6.0a0|>=5.2.4,<6.0a0|>=5.2.5,<6.0a0|>=5.2.6,<6.0a0']
pip -> python[version='>=3.8,<3.9.0a0'] -> xz[version='>=5.2.3,<6.0a0|>=5.2.4,<6.0a0|>=5.2.5,<6.0a0|>=5.2.6,<6.0a0']
python=3.8 -> xz[version='>=5.2.4,<6.0a0|>=5.2.5,<6.0a0|>=5.2.6,<6.0a0']
wheel -> python -> xz[version='>=5.2.3,<6.0a0|>=5.2.4,<6.0a0|>=5.2.5,<6.0a0|>=5.2.6,<6.0a0']

Package python conflicts for:
pip -> python[version='>=2.7,<2.8.0a0|>=3.10,<3.11.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0|>=3.5,<3.6.0a0']
pip -> wheel -> python
certifi -> python[version='>=2.7,<2.8.0a0|>=3.10,<3.11.0a0|>=3.9,<3.10.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0|>=3.5,<3.6.0a0']
setuptools -> certifi[version='>=2016.9.26'] -> python
setuptools -> python[version='>=2.7,<2.8.0a0|>=3.10,<3.11.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0|>=3.5,<3.6.0a0']
wheel -> setuptools -> python[version='>=3.10,<3.11.0a0|>=3.9,<3.10.0a0']
wheel -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0']

Package setuptools conflicts for:
setuptools
wheel -> setuptools
python=3.8 -> pip -> setuptools
pip -> setuptools
kinbot -> matplotlib -> setuptools

Package libstdcxx-ng conflicts for:
sqlite -> ncurses[version='>=6.2,<7.0a0'] -> libstdcxx-ng[version='>=7.3.0']
libstdcxx-ng
wheel -> python -> libstdcxx-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
ncurses -> libstdcxx-ng[version='>=7.2.0|>=7.3.0']
pip -> python[version='>=3.8,<3.9.0a0'] -> libstdcxx-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
certifi -> python[version='>=3.9,<3.10.0a0'] -> libstdcxx-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
readline -> ncurses[version='>=6.2,<7.0a0'] -> libstdcxx-ng[version='>=7.2.0|>=7.3.0']
python=3.8 -> libffi[version='>=3.2.1,<3.3a0'] -> libstdcxx-ng[version='>=7.2.0']
setuptools -> python[version='>=3.8,<3.9.0a0'] -> libstdcxx-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']
kinbot -> matplotlib -> libstdcxx-ng[version='>=11.2.0|>=7.2.0|>=7.3.0|>=7.5.0']
python=3.8 -> libstdcxx-ng[version='>=11.2.0|>=7.5.0|>=7.3.0']
libffi -> libstdcxx-ng[version='>=11.2.0|>=7.5.0|>=7.3.0|>=7.2.0']

Package ncurses conflicts for:
kinbot -> python[version='>=2.7,<2.8.0a0'] -> ncurses[version='6.0.*|>=6.0,<7.0a0|>=6.1,<7.0a0|>=6.2,<7.0a0|>=6.3,<7.0a0']
sqlite -> ncurses[version='>=6.2,<7.0a0']
python=3.8 -> readline[version='>=7.0,<8.0a0'] -> ncurses[version='6.0.*|>=6.0,<7.0a0']
wheel -> python -> ncurses[version='6.0.*|>=6.0,<7.0a0|>=6.1,<7.0a0|>=6.2,<7.0a0|>=6.3,<7.0a0']
readline -> ncurses[version='6.0.*|>=6.0,<7.0a0|>=6.1,<7.0a0|>=6.2,<7.0a0|>=6.3,<7.0a0']
pip -> python[version='>=3.8,<3.9.0a0'] -> ncurses[version='6.0.*|>=6.0,<7.0a0|>=6.1,<7.0a0|>=6.2,<7.0a0|>=6.3,<7.0a0']
setuptools -> python[version='>=3.8,<3.9.0a0'] -> ncurses[version='6.0.*|>=6.0,<7.0a0|>=6.1,<7.0a0|>=6.2,<7.0a0|>=6.3,<7.0a0']
python=3.8 -> ncurses[version='>=6.1,<7.0a0|>=6.2,<7.0a0|>=6.3,<7.0a0']
certifi -> python[version='>=3.9,<3.10.0a0'] -> ncurses[version='6.0.*|>=6.0,<7.0a0|>=6.1,<7.0a0|>=6.2,<7.0a0|>=6.3,<7.0a0']
sqlite -> readline[version='>=8.0,<9.0a0'] -> ncurses[version='6.0.*|>=6.1,<7.0a0|>=6.3,<7.0a0']
ncurses

Package libffi conflicts for:
pip -> python[version='>=3.8,<3.9.0a0'] -> libffi[version='3.2.*|>=3.2.1,<3.3a0|>=3.3,<3.4.0a0|>=3.4,<3.5|>=3.4,<4.0a0']
wheel -> python -> libffi[version='3.2.*|>=3.2.1,<3.3a0|>=3.3,<3.4.0a0|>=3.4,<3.5|>=3.4,<4.0a0']
setuptools -> python[version='>=3.8,<3.9.0a0'] -> libffi[version='3.2.*|>=3.2.1,<3.3a0|>=3.3,<3.4.0a0|>=3.4,<3.5|>=3.4,<4.0a0']
certifi -> python[version='>=3.9,<3.10.0a0'] -> libffi[version='3.2.*|>=3.2.1,<3.3a0|>=3.3,<3.4.0a0|>=3.4,<3.5|>=3.4,<4.0a0']
libffi
kinbot -> python[version='>=2.7,<2.8.0a0'] -> libffi[version='3.2.*|>=3.2.1,<3.3a0|>=3.3,<3.4.0a0|>=3.4,<3.5|>=3.4,<4.0a0']
python=3.8 -> libffi[version='>=3.2.1,<3.3a0|>=3.3,<3.4.0a0|>=3.4,<3.5|>=3.4,<4.0a0']

Package libgomp conflicts for:
libgcc-ng -> _openmp_mutex -> libgomp[version='>=7.5.0']
libgomp

Package zlib conflicts for:
tk -> zlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0']
sqlite -> zlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']
pip -> python[version='>=3.8,<3.9.0a0'] -> zlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']
wheel -> python -> zlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']
setuptools -> python[version='>=3.8,<3.9.0a0'] -> zlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']
certifi -> python[version='>=3.9,<3.10.0a0'] -> zlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']
python=3.8 -> zlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']
kinbot -> matplotlib -> zlib[version='>=1.2.11,<1.3.0a0|>=1.2.13,<1.3.0a0']
zlib

Package certifi conflicts for:
pip -> setuptools -> certifi[version='>=2016.09|>=2016.9.26']
setuptools -> certifi[version='>=2016.09|>=2016.9.26']
certifi
wheel -> setuptools -> certifi[version='>=2016.09|>=2016.9.26']The following specifications were found to be incompatible with your system:

  - feature:/linux-64::__glibc==2.35=0
  - feature:|@/linux-64::__glibc==2.35=0
  - bzip2 -> libgcc-ng[version='>=7.3.0'] -> __glibc[version='>=2.17']
  - libffi -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
  - libgcc-ng -> __glibc[version='>=2.17']
  - libstdcxx-ng -> __glibc[version='>=2.17']
  - libuuid -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
  - ncurses -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
  - openssl -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  - python=3.8 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
  - readline -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
  - sqlite -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
  - tk -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  - xz -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']
  - zlib -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']

Your installed version is: 2.35
cmartia commented 1 year ago

Hi, Thanks for trying KinBot. We are indeed updating the installation method to make it easier. The method to install KinBot is via pip (pip3), so pip install kinbot should do the work. I actually updated the instructions on how to install KinBot this last Friday. Let me also add that a conda-forge package will soon be available.

Also note that conda has it's own pip installer, so if you type pip install kinbot from within a conda environment, the installation will be confined to that environment.

Let me know if you have further comments.

kfir4444 commented 1 year ago

Thanks @cmartia. I use KinBot for a while, even tried to make some contributions. Note that when trying to use the instruction under your wiki, the following error occurs:

$ conda install -c zadorlab ase python=3.8
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: | 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed                                                                                                                                                                                                    

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package python conflicts for:
ase -> flask -> python[version='>=3.10,<3.11.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0|>=3.6|>=3.5,<3.6.0a0']
python=3.8
ase -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0']The following specifications were found to be incompatible with your system:

  - feature:/linux-64::__glibc==2.35=0
  - feature:|@/linux-64::__glibc==2.35=0

Your installed version is: 2.35
cmartia commented 1 year ago

Thanks for the heads up. I have corrected the wiki.