Job doesn't complete if it can't find the correct number of wells when auto-cropping

zamanianlab / wrmXpress

MIT License

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Job doesn't complete if it can't find the correct number of wells when auto-cropping #15

Closed wheelern closed 2 years ago

wheelern commented 2 years ago

The design of the auto_crop function in crop_wells.py is such that an error is raised (and the job crashes) if it can't find the exact number of wells provided in the YAML (multi-well-row/col). An example of the error is attached.

Log files 20220729-p04-KTR.txt 20220729-p04-KTR_10070010_0.txt

wheelern commented 2 years ago

Solution: warn the user and then switch to grid_crop. Also, provide better video preparation documentation to help the performance of auto_grid.