Add phylogenetic alpha and beta diversity metrics

zaneveld / GCMP_Global_Disease

This project hold the workflow for the Global Coral Microbiome Project's global comparison of coral disease susceptibility and microbiome structure.

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Add phylogenetic alpha and beta diversity metrics #29

Closed zaneveld closed 3 years ago

zaneveld commented 3 years ago

We need to write a Jupyter notebook that uses SEPP insertion (through the QIIME2 python API) to generate an updated tree, then calculate phylogenetic alpha and beta diversity metrics

zaneveld commented 3 years ago

Resolved by most recent PR by T. Brown.