Modify the plugin to be used with all APIs

zaneveld / q2-karenina

QIIME2 plugin for the karenina package for modeling stochastic microbiome dynamics

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Modify the plugin to be used with all APIs #21

Open jwdebelius opened 3 years ago

jwdebelius commented 3 years ago

Hi!

I'm really excited to use q2-karenina, but for reasons™️, I'd like to be able to use the python API rather than going through the command line. As I go through the code, there are a number of things that could be done to make it easier, would you be open to a refactor?

jwdebelius commented 3 years ago

Correlated to this: does it make sense to refactor to leverage the scikit-bio representations (i.e. OrdinationResults) verses self parsing the PCoA?