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zang0902 / EM-Net

Official repository for EM-Net: Efficient Channel and Frequency Learning with Mamba for 3D Medical Image Segmentation (MICCAI 2024)
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Dataset #2

Open chenyu1330 opened 1 week ago

chenyu1330 commented 1 week ago

Hello, thank you so much for your wonderful work! Can you provide a data set download link?

chuyhu commented 1 week ago

Hello, thank you so much for your wonderful work! Can you provide a data set download link?

The download link for this dataset is https://www.synapse.org/Synapse:syn3193805/wiki/217789, which can be downloaded by yourself.

chenyu1330 commented 1 week ago

image Hello, is the 83 data here used as the training and test set? But didn't the paper say 30?

chuyhu commented 1 week ago

image Hello, is the 83 data here used as the training and test set? But didn't the paper say 30? image You should log in to this website first.

chenyu1330 commented 1 week ago

image Hello, after I downloaded this dataset, I saw that the label in the RawData file had 13 segmentation categories, but the paper said that the Synpase dataset only had 8 categories.

chenyu1330 commented 1 week ago

I would like to ask whether the link you gave me is Synpase dataset or BTCV dataset, and then is there a download link for another dataset? Thank you for your reply!

zang0902 commented 1 week ago

I would like to ask whether the link you gave me is Synpase dataset or BTCV dataset, and then is there a download link for another dataset? Thank you for your reply!

BTCV is a dataset proposed in a previous competition that contains more challenging organs, whereas its subset, Synapse, retains only the main organs. The Synapse dataset consists of 8 organs: spleen, right kidney, left kidney, gallbladder, liver, stomach, aorta, and pancreas. In addition to the 8 organs in Synapse, BTCV also includes esophagus, inferior vena cava, portal and splenic veins, and right and left adrenal glands. These datasets are widely used in the field. You need to select the 8 organs that are included in the Synapse labels from this dataset.

chenyu1330 commented 1 week ago

Therefore, what I just downloaded is the BTCV data set. Do you have the download link of the synpase data set? Or do you make the label according to the btcv data set by yourself

chenyu1330 commented 1 week ago

Therefore, BTCV and Synpase both use the same 30 training test examples, but there are only 8 categories of labels required for Synpase. Does this label need to modify the labels in the data set just downloaded by itself? For example, change the remaining 5 categories to the background?

chenyu1330 commented 1 week ago

Hello, do you have the label order corresponding to the 13 categories in the BTCV data set? Besides, why is there still one category missing in the experimental data of BTCV in the paper. image

chuyhu commented 1 week ago

Hello, do you have the label order corresponding to the 13 categories in the BTCV data set? Besides, why is there still one category missing in the experimental data of BTCV in the paper. image

Due to the page width limitations, we have merged the right and left adrenal glands into AG. This has been clearly stated in the paper, please read the paper carefully. image

zang0902 commented 1 week ago

Hello, do you have the label order corresponding to the 13 categories in the BTCV data set? Besides, why is there still one category missing in the experimental data of BTCV in the paper. image

Please refer to the labels order from the introduction of BTCV dataset on its page. image

chenyu1330 commented 1 week ago

So how do you get the Synpase data set is the image still the same as BTCV and then do the tags have to be modified by themselves and change the extra five to the background how do you do that