Ordering the cases based on stats like segmentation volume

zapaishchykova / SegmentationReview

Slicer3D extension for rating using Likert-type score Deep-learning generated segmentations, with segment editor functionality. Created to speed up the validation process done by a clinician - the dataset loads in one batch with no need to load masks and volumes separately.

MIT License

25 stars 9 forks source link

Ordering the cases based on stats like segmentation volume #15

Closed ibro45 closed 4 weeks ago

ibro45 commented 4 months ago

Hi all,

Really cool tool!

Is it possible to order the cases by pre-computed stats like segmentation volume size? When going through an extremely large cohort, it would be cool to have the ability to sort them and effectively look at the n-th percentile of smallest and biggest volumes.

Obviously, one could still do that manually by setting up a folder with filtered-out cases and running SegmentationReview as usual.

zapaishchykova commented 2 months ago

Hi Ibro, You can sort the csv file however you'd like and then the extension will use mapping.csv to show cases in the correct order. Let me know if that helps!