search

zarr-developers / numcodecs

A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
http://numcodecs.readthedocs.io
MIT License
125 stars 86 forks source link

0.11.0: pep517 based build fails #418

Open kloczek opened 1 year ago

kloczek commented 1 year ago

numcodecs pep517 build fails

+ /usr/bin/python3 -sBm build -w --no-isolation
* Getting build dependencies for wheel...
[numcodecs] setting up Blosc extension
[numcodecs] compiling Blosc extension with SSE2 support
Traceback (most recent call last):
  File "/usr/lib/python3.8/site-packages/pep517/in_process/_in_process.py", line 351, in <module>
    main()
  File "/usr/lib/python3.8/site-packages/pep517/in_process/_in_process.py", line 333, in main
    json_out['return_val'] = hook(**hook_input['kwargs'])
  File "/usr/lib/python3.8/site-packages/pep517/in_process/_in_process.py", line 118, in get_requires_for_build_wheel
    return hook(config_settings)
  File "/usr/lib/python3.8/site-packages/setuptools/build_meta.py", line 338, in get_requires_for_build_wheel
    return self._get_build_requires(config_settings, requirements=['wheel'])
  File "/usr/lib/python3.8/site-packages/setuptools/build_meta.py", line 320, in _get_build_requires
    self.run_setup()
  File "/usr/lib/python3.8/site-packages/setuptools/build_meta.py", line 335, in run_setup
    exec(code, locals())
  File "<string>", line 254, in <module>
  File "<string>", line 237, in run_setup
  File "<string>", line 69, in blosc_extension
UnboundLocalError: local variable 'blosc_sources' referenced before assignment
jakirkham commented 1 year ago

Need to checkout the git submodules as well. Would run this in the source directory

git submodule update --init --recursive
kloczek commented 7 months ago

Do you have any plans provide build numcodecs against against shared system installed libblosc? 🤔

jakirkham commented 7 months ago

@kloczek could you please try the above suggestion and let us know how it goes?

kloczek commented 7 months ago

BTW in mean time I found that Fedora has full set of patches unbundling not only blosc but zstd and lz4 as well https://src.fedoraproject.org/rpms/python-numcodecs I think that it would be good merge those patches here.

kloczek commented 7 months ago

With those patches it is possible to build numcodecs against all those shared libraries. Additionally just found that with LTO was possible to expose on code issue. There are as well other warnings. Look on below output

```console + /usr/bin/python3 -sBm build -w --no-isolation * Getting build dependencies for wheel... [numcodecs] setting up Blosc extension [numcodecs] setting up Zstandard extension [numcodecs] setting up LZ4 extension [numcodecs] setting up compat extension [numcodecs] setting up shuffle extension [numcodecs] setting up vlen extension [numcodecs] setting up fletcher32 extension [numcodecs] setting up jenkins extension running egg_info creating numcodecs.egg-info writing numcodecs.egg-info/PKG-INFO writing dependency_links to numcodecs.egg-info/dependency_links.txt writing requirements to numcodecs.egg-info/requires.txt writing top-level names to numcodecs.egg-info/top_level.txt writing manifest file 'numcodecs.egg-info/SOURCES.txt' reading manifest file 'numcodecs.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'numcodecs.egg-info/SOURCES.txt' * Building wheel... [numcodecs] setting up Blosc extension [numcodecs] setting up Zstandard extension [numcodecs] setting up LZ4 extension [numcodecs] setting up compat extension [numcodecs] setting up shuffle extension [numcodecs] setting up vlen extension [numcodecs] setting up fletcher32 extension [numcodecs] setting up jenkins extension running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-38 creating build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/__init__.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/abc.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/astype.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/base64.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/bitround.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/bz2.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/categorize.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/checksum32.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/compat.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/delta.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/fixedscaleoffset.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/gzip.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/json.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/lzma.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/msgpacks.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/ndarray_like.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/packbits.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/pickles.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/quantize.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/registry.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/shuffle.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/zfpy.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/zlib.py -> build/lib.linux-x86_64-cpython-38/numcodecs copying ./numcodecs/version.py -> build/lib.linux-x86_64-cpython-38/numcodecs creating build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/__init__.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/common.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_astype.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_base64.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_bitround.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_bz2.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_categorize.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_checksum32.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_compat.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_delta.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_entrypoints.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_entrypoints_backport.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_fixedscaleoffset.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_fletcher32.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_gzip.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_jenkins.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_json.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_lz4.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_lzma.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_msgpacks.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_ndarray_like.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_packbits.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_pickles.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_quantize.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_registry.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_shuffle.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_vlen_array.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_vlen_bytes.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_vlen_utf8.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_zfpy.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_zlib.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_zstd.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests copying ./numcodecs/tests/test_blosc.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests running egg_info writing numcodecs.egg-info/PKG-INFO writing dependency_links to numcodecs.egg-info/dependency_links.txt writing requirements to numcodecs.egg-info/requires.txt writing top-level names to numcodecs.egg-info/top_level.txt reading manifest file 'numcodecs.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'numcodecs.egg-info/SOURCES.txt' creating build/lib.linux-x86_64-cpython-38/numcodecs/tests/package_with_entrypoint copying ./numcodecs/tests/package_with_entrypoint/__init__.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests/package_with_entrypoint creating build/lib.linux-x86_64-cpython-38/numcodecs/tests/package_with_entrypoint-0.1.dist-info copying ./numcodecs/tests/package_with_entrypoint-0.1.dist-info/entry_points.txt -> build/lib.linux-x86_64-cpython-38/numcodecs/tests/package_with_entrypoint-0.1.dist-info running build_ext Compiling numcodecs/blosc.pyx because it changed. [1/1] Cythonizing numcodecs/blosc.pyx building 'numcodecs.blosc' extension creating build/temp.linux-x86_64-cpython-38 creating build/temp.linux-x86_64-cpython-38/numcodecs /usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -I/usr/include/python3.8 -c numcodecs/blosc.c -o build/temp.linux-x86_64-cpython-38/numcodecs/blosc.o In function ‘__pyx_pf_9numcodecs_5blosc_20compress’, inlined from ‘__pyx_pw_9numcodecs_5blosc_21compress’ at numcodecs/blosc.c:5254:13: numcodecs/blosc.c:6051:6: warning: ‘__pyx_v_cbytes’ may be used uninitialized [-Wmaybe-uninitialized] 6051 | if (unlikely(__pyx_t_6)) { | ^ numcodecs/blosc.c: In function ‘__pyx_pw_9numcodecs_5blosc_21compress’: numcodecs/blosc.c:5273:7: note: ‘__pyx_v_cbytes’ was declared here 5273 | int __pyx_v_cbytes; | ^~~~~~~~~~~~~~ /usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/blosc.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/blosc.cpython-38-x86_64-linux-gnu.so -lblosc Compiling numcodecs/zstd.pyx because it changed. [1/1] Cythonizing numcodecs/zstd.pyx building 'numcodecs.zstd' extension /usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -I/usr/include/python3.8 -c numcodecs/zstd.c -o build/temp.linux-x86_64-cpython-38/numcodecs/zstd.o numcodecs/zstd.c: In function ‘__pyx_pf_9numcodecs_4zstd_2decompress’: numcodecs/zstd.c:3622:5: warning: ‘ZSTD_getDecompressedSize’ is deprecated [-Wdeprecated-declarations] 3622 | __pyx_v_dest_size = ZSTD_getDecompressedSize(__pyx_v_source_ptr, __pyx_v_source_size); | ^~~~~~~~~~~~~~~~~ In file included from numcodecs/zstd.c:1205: /usr/include/zstd.h:203:20: note: declared here 203 | unsigned long long ZSTD_getDecompressedSize(const void* src, size_t srcSize); | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/zstd.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/zstd.cpython-38-x86_64-linux-gnu.so -lzstd Compiling numcodecs/lz4.pyx because it changed. [1/1] Cythonizing numcodecs/lz4.pyx building 'numcodecs.lz4' extension /usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -I/usr/include/python3.8 -c numcodecs/lz4.c -o build/temp.linux-x86_64-cpython-38/numcodecs/lz4.o /usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/lz4.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/lz4.cpython-38-x86_64-linux-gnu.so -llz4 Compiling numcodecs/compat_ext.pyx because it changed. [1/1] Cythonizing numcodecs/compat_ext.pyx building 'numcodecs.compat_ext' extension /usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -I/usr/include/python3.8 -c numcodecs/compat_ext.c -o build/temp.linux-x86_64-cpython-38/numcodecs/compat_ext.o /usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/compat_ext.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/compat_ext.cpython-38-x86_64-linux-gnu.so Compiling numcodecs/_shuffle.pyx because it changed. [1/1] Cythonizing numcodecs/_shuffle.pyx building 'numcodecs._shuffle' extension /usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -I/usr/include/python3.8 -c numcodecs/_shuffle.c -o build/temp.linux-x86_64-cpython-38/numcodecs/_shuffle.o /usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/_shuffle.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/_shuffle.cpython-38-x86_64-linux-gnu.so Compiling numcodecs/vlen.pyx because it changed. [1/1] Cythonizing numcodecs/vlen.pyx building 'numcodecs.vlen' extension /usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -Inumcodecs -I/usr/include/python3.8 -c numcodecs/vlen.c -o build/temp.linux-x86_64-cpython-38/numcodecs/vlen.o /usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/vlen.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/vlen.cpython-38-x86_64-linux-gnu.so Compiling numcodecs/fletcher32.pyx because it changed. [1/1] Cythonizing numcodecs/fletcher32.pyx building 'numcodecs.fletcher32' extension /usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -Inumcodecs -I/usr/include/python3.8 -c numcodecs/fletcher32.c -o build/temp.linux-x86_64-cpython-38/numcodecs/fletcher32.o /usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/fletcher32.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/fletcher32.cpython-38-x86_64-linux-gnu.so Compiling numcodecs/jenkins.pyx because it changed. [1/1] Cythonizing numcodecs/jenkins.pyx building 'numcodecs.jenkins' extension /usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -DCYTHON_TRACE=1 -Inumcodecs -I/usr/include/python3.8 -c numcodecs/jenkins.c -o build/temp.linux-x86_64-cpython-38/numcodecs/jenkins.o /usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/jenkins.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/jenkins.cpython-38-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/__init__.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/abc.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/astype.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/base64.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/bitround.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/bz2.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/categorize.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/checksum32.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/compat.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/delta.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/fixedscaleoffset.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/gzip.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/json.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/lzma.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/msgpacks.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/ndarray_like.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/packbits.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/pickles.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/quantize.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/registry.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/shuffle.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/zfpy.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/zlib.py -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/version.py -> build/bdist.linux-x86_64/wheel/numcodecs creating build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/__init__.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/common.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_astype.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_base64.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_bitround.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_bz2.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_categorize.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_checksum32.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_compat.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_delta.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_entrypoints.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_entrypoints_backport.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_fixedscaleoffset.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_fletcher32.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_gzip.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_jenkins.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_json.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_lz4.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_lzma.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_msgpacks.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_ndarray_like.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_packbits.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_pickles.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_quantize.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_registry.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_shuffle.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_vlen_array.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_vlen_bytes.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_vlen_utf8.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_zfpy.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_zlib.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_zstd.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_blosc.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests creating build/bdist.linux-x86_64/wheel/numcodecs/tests/package_with_entrypoint copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/package_with_entrypoint/__init__.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests/package_with_entrypoint creating build/bdist.linux-x86_64/wheel/numcodecs/tests/package_with_entrypoint-0.1.dist-info copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/package_with_entrypoint-0.1.dist-info/entry_points.txt -> build/bdist.linux-x86_64/wheel/numcodecs/tests/package_with_entrypoint-0.1.dist-info copying build/lib.linux-x86_64-cpython-38/numcodecs/blosc.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/zstd.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/lz4.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/compat_ext.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/_shuffle.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/vlen.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/fletcher32.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs copying build/lib.linux-x86_64-cpython-38/numcodecs/jenkins.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs running install_egg_info Copying numcodecs.egg-info to build/bdist.linux-x86_64/wheel/numcodecs-0.12.1-py3.8.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/numcodecs-0.12.1.dist-info/WHEEL creating '/home/tkloczko/rpmbuild/BUILD/numcodecs-0.12.1/dist/.tmp-puda15j3/numcodecs-0.12.1-cp38-cp38-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'numcodecs/__init__.py' adding 'numcodecs/_shuffle.cpython-38-x86_64-linux-gnu.so' adding 'numcodecs/abc.py' adding 'numcodecs/astype.py' adding 'numcodecs/base64.py' adding 'numcodecs/bitround.py' adding 'numcodecs/blosc.cpython-38-x86_64-linux-gnu.so' adding 'numcodecs/bz2.py' adding 'numcodecs/categorize.py' adding 'numcodecs/checksum32.py' adding 'numcodecs/compat.py' adding 'numcodecs/compat_ext.cpython-38-x86_64-linux-gnu.so' adding 'numcodecs/delta.py' adding 'numcodecs/fixedscaleoffset.py' adding 'numcodecs/fletcher32.cpython-38-x86_64-linux-gnu.so' adding 'numcodecs/gzip.py' adding 'numcodecs/jenkins.cpython-38-x86_64-linux-gnu.so' adding 'numcodecs/json.py' adding 'numcodecs/lz4.cpython-38-x86_64-linux-gnu.so' adding 'numcodecs/lzma.py' adding 'numcodecs/msgpacks.py' adding 'numcodecs/ndarray_like.py' adding 'numcodecs/packbits.py' adding 'numcodecs/pickles.py' adding 'numcodecs/quantize.py' adding 'numcodecs/registry.py' adding 'numcodecs/shuffle.py' adding 'numcodecs/version.py' adding 'numcodecs/vlen.cpython-38-x86_64-linux-gnu.so' adding 'numcodecs/zfpy.py' adding 'numcodecs/zlib.py' adding 'numcodecs/zstd.cpython-38-x86_64-linux-gnu.so' adding 'numcodecs/tests/__init__.py' adding 'numcodecs/tests/common.py' adding 'numcodecs/tests/test_astype.py' adding 'numcodecs/tests/test_base64.py' adding 'numcodecs/tests/test_bitround.py' adding 'numcodecs/tests/test_blosc.py' adding 'numcodecs/tests/test_bz2.py' adding 'numcodecs/tests/test_categorize.py' adding 'numcodecs/tests/test_checksum32.py' adding 'numcodecs/tests/test_compat.py' adding 'numcodecs/tests/test_delta.py' adding 'numcodecs/tests/test_entrypoints.py' adding 'numcodecs/tests/test_entrypoints_backport.py' adding 'numcodecs/tests/test_fixedscaleoffset.py' adding 'numcodecs/tests/test_fletcher32.py' adding 'numcodecs/tests/test_gzip.py' adding 'numcodecs/tests/test_jenkins.py' adding 'numcodecs/tests/test_json.py' adding 'numcodecs/tests/test_lz4.py' adding 'numcodecs/tests/test_lzma.py' adding 'numcodecs/tests/test_msgpacks.py' adding 'numcodecs/tests/test_ndarray_like.py' adding 'numcodecs/tests/test_packbits.py' adding 'numcodecs/tests/test_pickles.py' adding 'numcodecs/tests/test_quantize.py' adding 'numcodecs/tests/test_registry.py' adding 'numcodecs/tests/test_shuffle.py' adding 'numcodecs/tests/test_vlen_array.py' adding 'numcodecs/tests/test_vlen_bytes.py' adding 'numcodecs/tests/test_vlen_utf8.py' adding 'numcodecs/tests/test_zfpy.py' adding 'numcodecs/tests/test_zlib.py' adding 'numcodecs/tests/test_zstd.py' adding 'numcodecs/tests/package_with_entrypoint/__init__.py' adding 'numcodecs-0.12.1.dist-info/LICENSE.txt' adding 'numcodecs-0.12.1.dist-info/METADATA' adding 'numcodecs-0.12.1.dist-info/WHEEL' adding 'numcodecs-0.12.1.dist-info/top_level.txt' adding 'numcodecs/tests/package_with_entrypoint-0.1.dist-info/entry_points.txt' adding 'numcodecs-0.12.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel /usr/lib/python3.8/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'numcodecs.tests.package_with_entrypoint' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'numcodecs.tests.package_with_entrypoint' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'numcodecs.tests.package_with_entrypoint' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'numcodecs.tests.package_with_entrypoint' to be distributed and are already explicitly excluding 'numcodecs.tests.package_with_entrypoint' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) Successfully built numcodecs-0.12.1-cp38-cp38-linux_x86_64.whl ```