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zarr-developers / zarr-python

An implementation of chunked, compressed, N-dimensional arrays for Python.
https://zarr.readthedocs.io
MIT License
1.45k stars 273 forks source link

Bump the requirements group across 1 directory with 5 updates #2100

Closed dependabot[bot] closed 2 weeks ago

dependabot[bot] commented 3 weeks ago

Bumps the requirements group with 5 updates in the / directory:

Package From To
numpy 2.0.1 2.1.0
numcodecs 0.12.1 0.13.0
azure-storage-blob 12.16.0 12.22.0
fsspec 2023.12.2 2024.6.1
s3fs 2023.12.2 2024.6.1

Updates numpy from 2.0.1 to 2.1.0

Release notes

Sourced from numpy's releases.

2.1.0 (Aug 18, 2024)

NumPy 2.1.0 Release Notes

NumPy 2.1.0 provides support for the upcoming Python 3.13 release and drops support for Python 3.9. In addition to the usual bug fixes and updated Python support, it helps get us back into our usual release cycle after the extended development of 2.0. The highlights for this release are:

  • Support for the array-api 2023.12 standard.
  • Support for Python 3.13.
  • Preliminary support for free threaded Python 3.13.

Python versions 3.10-3.13 are supported in this release.

New functions

New function numpy.unstack

A new function np.unstack(array, axis=...) was added, which splits an array into a tuple of arrays along an axis. It serves as the inverse of [numpy.stack]{.title-ref}.

(gh-26579)

Deprecations

  • The fix_imports keyword argument in numpy.save is deprecated. Since NumPy 1.17, numpy.save uses a pickle protocol that no longer supports Python 2, and ignored fix_imports keyword. This keyword is kept only for backward compatibility. It is now deprecated.

    (gh-26452)

  • Passing non-integer inputs as the first argument of [bincount]{.title-ref} is now deprecated, because such inputs are silently cast to integers with no warning about loss of precision.

    (gh-27076)

Expired deprecations

  • Scalars and 0D arrays are disallowed for numpy.nonzero and numpy.ndarray.nonzero.

    (gh-26268)

  • set_string_function internal function was removed and PyArray_SetStringFunction was stubbed out.

... (truncated)

Commits
  • 2f7fe64 Merge pull request #27236 from charris/prepare-2.1.0
  • b6f434f REL: Prepare for the NumPy 2.1.0 release [wheel build]
  • 3cf9394 Merge pull request #27234 from charris/backport-25984
  • 7443dcc Merge pull request #27233 from charris/backport-27223
  • 85b1cab BUG: Allow fitting of degree zero polynomials with Polynomial.fit
  • 395a81d DOC: reword discussion about shared arrays to hopefully be clearer
  • 5af2e96 Move NUMUSERTYPES thread safety discussion to legacy DType API docs
  • d902c24 DOC: add docs on thread safety in NumPy
  • c080180 Merge pull request #27229 from charris/backport-27226
  • 44ce7e8 BUG: Fix PyArray_ZeroContiguousBuffer (resize) with struct dtypes
  • Additional commits viewable in compare view


Updates numcodecs from 0.12.1 to 0.13.0

Release notes

Sourced from numcodecs's releases.

v0.13.0

See release notes https://numcodecs.readthedocs.io/en/stable/release.html#release-0-13-0

Changelog

Sourced from numcodecs's changelog.

0.13.0

Enhancements

* Add checksum flag to zstd and sets the default level to 0.
  By :user:`Norman Rzepka <normanrz>`, :issue:`519`.
* Add PCodec
  By :user:`Ryan Abernathey <rabernat>`, :issue:`501`.
* Use PyData theme for docs
  By :user:`John Kirkham <jakirkham>`, :issue:`485`.

Fix


* Fix VLenUTF8 encoding for read-only buffers.
  By :user:`Isaac Virshup &lt;ivirshup&gt;`, :issue:`514`.
* Fix skip of entry points backport tests
  By :user:`Elliott Sales de Andrade &lt;QuLogic&gt;`, :issue:`487`.
* Fix Upgrade to Zstd 1.5.5 due to potential corruption.
  By :user:`Mark Kittisopikul &lt;mkitti&gt;`, :issue:`429`
* Add version constraint(&lt;2.0) for numpy in zfpy.
  By :user:`Tom Liang &lt;px39n&gt;`, :issue:`540`.

Maintenance



    

  • The minimum supported Python version is now Python 3.10.
    
By :user:David Stansby &lt;dstansby&gt;, :issue:531
    • 

  • Add numpy 2 compatibility.
    
By :user:David Stansby &lt;dstansby&gt;, :issue:535
    • 

  • Update c-blosc to 1.21.0 to 1.21.5, zstd from 1.4.8 to 1.5.5,
    
lz4 from 1.9.3 to 1.9.4, and zlib from 1.2.8 to to 1.2.13
    
By :user:Mark Kittisopikul &lt;mkitti&gt;, :issue:500
    • 



.. _release_0.12.1:

Commits


Updates azure-storage-blob from 12.16.0 to 12.22.0

Release notes

Sourced from azure-storage-blob's releases.

azure-storage-blob_12.22.0

12.22.0 (2024-08-06)

Other Changes

  • Updated type hints across the entire package and enabled MyPy to run during CI. Some public types may have been adjusted if they were previously erroneous or incomplete.

azure-storage-blob_12.21.0

12.21.0 (2024-07-17)

Features Added

  • Stable release of features from 12.21.0b1
  • Added new chars keyword to the StorageStreamDownloader.read method to support reading an arbitrary number of characters from the stream rather than bytes. This can only be used when encoding is specified on download_blob but can help prevent decoding errors in certain scenarios.
Commits
  • c3902f8 Disable breaking storage sync check (#36786)
  • 3e7ef5a add a couple pyproject.toml to disable breaking change check (#36785)
  • fa13668 Bump 1 more time (#36783)
  • 43e0189 Changes logged (#36768)
  • 21b8383 [Storage] Migrate from ClientSecretCredential to DefaultAzureCredential i...
  • fc4327f [Storage] Blobs Typing API View Feedback (#36654)
  • 85eb9ee Update various credential mocks (#36620)
  • 14fe734 [Storage] Modified StorageRetryPolicy to skip AzureSigningError from bad ...
  • 6f0da99 Simplify build yml (#36567)
  • 4739b70 [Storage] Removed docstrings from Blob's helper files + slight _shared matc...
  • Additional commits viewable in compare view


Updates fsspec from 2023.12.2 to 2024.6.1

Commits


Updates s3fs from 2023.12.2 to 2024.6.1

Commits


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dependabot[bot] commented 2 weeks ago

Looks like these dependencies are updatable in another way, so this is no longer needed.