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zavolanlab / Dockerfiles

Dockerfile repository of the Zavolan Lab
Apache License 2.0
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Build docker image for phytools #4

Closed fgypas closed 4 years ago

fgypas commented 6 years ago

Build docker image for https://cran.r-project.org/web/packages/phytools/

Include also https://cran.r-project.org/web/packages/optparse/index.html

fgypas commented 6 years ago

Take a look here: https://github.com/zavolanlab/MIRZAG/issues/7

fgypas commented 6 years ago

Fixed by #10

fgypas commented 6 years ago

reopen issue because when the image is pulled from singularity and try to load the package ape (that is a dependency) I get the following error:

library("ape") Error: package or namespace load failed for ‘ape’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/scicore/home/zavolan/gypas/R/x86_64-pc-linux-gnu-library/3.5/nlme/libs/nlme.so': libgfortran.so.3: cannot open shared object file: No such file or directory

fgypas commented 6 years ago

Also when pulling from singularity we get the following:

WARNING: docker-extract failed, missing executable or libarchive
WARNING: Will use old layer extraction method - this does not handle whiteouts
fgypas commented 4 years ago

Available here: https://github.com/zavolanlab/prune_tree/blob/master/Dockerfile