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zavolanlab
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Dockerfiles
Dockerfile repository of the Zavolan Lab
Apache License 2.0
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Minify frequently used images
#63
uniqueg
closed
4 years ago
0
Replace base image for kallisto from miniconda to ubuntu
#62
fgypas
closed
4 years ago
3
Replace kallisto Dockerfile without conda
#61
fgypas
closed
4 years ago
2
Alter Dockerfile for kallisto
#60
fgypas
closed
4 years ago
0
Inconsistency between Dockerfiles and singularity images
#59
fgypas
opened
4 years ago
0
Added Dockerfile and conda env YAML
#58
AngryMaciek
closed
4 years ago
0
Removed old MAPP directory
#57
AngryMaciek
closed
4 years ago
0
Added Dockerfile and YAML env
#56
AngryMaciek
closed
4 years ago
0
Added Dockerfile and YAML for conda env
#55
AngryMaciek
closed
4 years ago
0
Added Imagemagick: Dockerfile and YAML env
#54
AngryMaciek
closed
4 years ago
0
Added SUPPA2 Dockerfile and env. file
#53
AngryMaciek
closed
4 years ago
0
Update omniclip
#52
fgypas
closed
4 years ago
0
Add contribution instructions
#51
fgypas
closed
4 years ago
0
add bedtools to 2.28.0 & samtools 1.10
#50
uniqueg
closed
4 years ago
0
implement continuous integration
#49
uniqueg
closed
4 years ago
0
Add Biopython in rcrunch_python_1.0.3
#48
fgypas
closed
4 years ago
0
add ALFA v1.1.1; pushed Docker image
#47
uniqueg
closed
4 years ago
0
Explore DockerSlim
#46
uniqueg
opened
4 years ago
0
updated MultiQC to v1.8; pushed Docker image
#45
uniqueg
closed
4 years ago
0
add Dockerfile for Salmon v1.1.0; use maintainer's images
#44
uniqueg
closed
4 years ago
0
Multiqc
#43
uniqueg
closed
4 years ago
0
Phylogibbs 1.2 python3.6.8
#42
fgypas
closed
4 years ago
2
added kallisto dockerfile and environment yaml
#41
AngryMaciek
closed
4 years ago
0
Update pandas dependency to 0.25 for rcrunch python dockerfile. New t…
#40
fgypas
closed
5 years ago
0
Addition of motevo version 1.12
#39
fgypas
closed
5 years ago
0
Add new version of motevo (1.2)
#38
fgypas
closed
5 years ago
0
Add v 1.0.1 with cython and ushuffle
#37
fgypas
closed
5 years ago
0
MAPP v0.0.9 added
#36
AngryMaciek
closed
5 years ago
2
Implement CI/CD approach
#35
fgypas
closed
4 years ago
1
Write contribution instructions
#34
fgypas
closed
4 years ago
0
Readded tests
#33
uniqueg
closed
5 years ago
0
Added other version; rearranged folders
#32
uniqueg
closed
5 years ago
0
Fixed option
#31
uniqueg
closed
5 years ago
0
Added 'ascii_alignment_pileup.R' custom R script
#30
uniqueg
closed
5 years ago
0
Installation of motevo with python 3.6.8 and the following python pac…
#29
fgypas
closed
5 years ago
0
R single cell analysis
#28
uniqueg
closed
5 years ago
0
Picard
#27
fgypas
closed
2 years ago
1
Update picard version to 2.20.2
#26
mkatsanto
opened
5 years ago
1
Addition of STAR version 2.7.1a. STAR and STARlong are available.
#25
fgypas
closed
5 years ago
0
Addition of HTSeq==0.10.0 matplotlib==3.0.2 in Python/3.6.5/Dockerfile
#24
fgypas
closed
5 years ago
0
Addition of pandas==0.24.1 in Python/3.6.5/Dockerfile
#23
fgypas
closed
5 years ago
0
Added missing dependency (matplotlib==3.0.2) that caused crashing of …
#22
fgypas
closed
5 years ago
0
Addition of Dockerfile for FastQC version 0.11.8
#21
fgypas
closed
5 years ago
0
ubuntu with wget
#20
fgypas
closed
5 years ago
0
Addition of vast-tools version 2.1.3
#19
fgypas
closed
5 years ago
0
Addition of sam_trx_to_sam_gen_script_perl
#18
paulaidt
closed
5 years ago
3
Addition of bedops Dockerfile version 2.4.35
#17
fgypas
closed
5 years ago
0
Sqanti
#16
fgypas
closed
4 years ago
4
Include source code in oligomap Dockerfile
#15
fgypas
opened
5 years ago
0
Rmats
#14
fgypas
closed
5 years ago
0
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