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zavolanlab / PAQR2

Updated version of PAQR, which was previously available in the PAQR_KAPAC joint repository.
GNU General Public License v2.0
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bug in "plot-ecdfs.R" ?? #4

Closed ninsch3000 closed 3 years ago

ninsch3000 commented 3 years ago

When using only 2 genes in 2 samples as input for testing, the ecdf plot x axes spans only the exon lengths of the first sample (99.8 & 100 %), although exon lengths in the second sample are 63 and 75 %, respectively. Is this effect desired? If including more genes the effect is probably not visible anymore, if there are also shorter exons in the first sample.
Not sure how to approach this issue.

ninsch3000 commented 3 years ago

Did a quick fix in this commit: https://github.com/zavolanlab/PAQR2/commit/1d85834e003ca98e3d0e7f97488139e9456f4c11
Now, before plotting, the smallest value of relative exon length among all genes and samples is found and used as minimum x value.

AngryMaciek commented 3 years ago

Closed? Would you like to open a new one for refactoring this step? @ninsch3000