annotation files for mm10

zavolanlab / PAQR_KAPAC

scripts, pipelines and documentation to run PAQR and KAPAC; KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes; PAQR enables the quantification of poly(A) site usage from standard RNA-seq data

GNU General Public License v2.0

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annotation files for mm10 #3

Closed xflicsu closed 5 years ago

xflicsu commented 5 years ago

Hello, PAQR_KAPAC is a powerful tool to investigate APA. You have provided two annotation file of human. data/annotation/clusters.hg38.canonical_chr.tandem.noOverlap_strand_specific.bed data/annotation/full_transcripts.hg38.canonical_chr.tandem.noOverlap_strand_specific.bed

Now, I try to investigate APA of mouse. So, could provide the annotation files of mm10?

fgypas commented 5 years ago

Hi @xflicsu . Thank you for your interest in PAQR and KAPAC. We will come back to you in a few days with the requested files.

koljaLanger commented 5 years ago

Hi @xflicsu We updated the repository and it contains an 'mm10' directory now under PAQR/data/annotation with both files you were asking for. I close the issue for now, hoping that this is what you actually require. If this is not the case, please feel free to open the issue again.