Logomaker Error while plotting some sequence logos

zavolanlab / bindz-rbp

RBP module for bindz, a bioinformatics tool to detect regulators' binding sites on RNA sequences.

https://github.com/zavolanlab/bindz-rbp

Apache License 2.0

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Logomaker Error while plotting some sequence logos #33

Closed AngryMaciek closed 4 years ago

AngryMaciek commented 4 years ago

Describe the bug I was trying to run our pipeline os a real-life example and the rule which plots sequence logos raised error while processing files: PTBP1_143 and PTBP1_165. The error says: logomaker.src.error_handling.LogomakerError: some columns in df sum to nearly zero.

To Reproduce Run the pipeline with the above mentioned PWM files (they are in ATtRACT databse)