zavolanlab / bindz-rbp

RBP module for bindz, a bioinformatics tool to detect regulators' binding sites on RNA sequences.
https://github.com/zavolanlab/bindz-rbp
Apache License 2.0
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Allow pwm motif files with . and fix logomaker issue #35

Closed krish8484 closed 4 years ago

krish8484 commented 4 years ago

Description

Please include a summary of the change and which issue is fixed. Please also include relevant motivation and context. List any dependencies that are required for this change.

Fixes #32, #33 (issue)

Type of change

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Checklist:

krish8484 commented 4 years ago

Now the script can take files with . in it. Issue #33 seems like an internal issue in logomaker. On analysing, I found that this issue only occurs when all the four columns in a row are 25. To fix this, I just added script to change one row to be 25.01 and other to 24.99. This will not give us that error and also wont change the output. I have ran the pipeline for all the motifs in ATtRACT-motifs and it is passing for all now.