At the moment of our 1.0.0 release snakemake contains a strange, non-deterministic bug linked to "incorrect singularity version" message. It is raised on selected CI runs, despite no changes to the code whatsoever; despite us installing a correct singularity version in the travis.yml file.
We only observe this error message while installing singularity on Travis machines, never on our computational cluster.
For now, test run with containers has to be turned off in the CI.
Regardless, the recommended way of running this workflow is in conda virtual environments.
Type of change
Please delete options that are not relevant.
[x] Bug fix (non-breaking change which fixes an issue)
Checklist:
[x] My code follows the style guidelines of this project
[x] I have performed a self-review of my own code
[x] I have commented my code, particularly in hard-to-understand areas
[x] My changes generate no new warnings
[x] I have added tests that prove my fix is effective or that my feature works
[x] New and existing unit tests pass locally with my changes
Description
At the moment of our
1.0.0release snakemake contains a strange, non-deterministic bug linked to "incorrectsingularityversion" message. It is raised on selected CI runs, despite no changes to the code whatsoever; despite us installing a correctsingularityversion in thetravis.ymlfile.We only observe this error message while installing
singularityon Travis machines, never on our computational cluster.For now, test run with containers has to be turned off in the CI.
Regardless, the recommended way of running this workflow is in
condavirtual environments.Type of change
Please delete options that are not relevant.
Checklist: