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zavolanlab / bindz-rbp

RBP module for bindz, a bioinformatics tool to detect regulators' binding sites on RNA sequences.
https://github.com/zavolanlab/bindz-rbp
Apache License 2.0
7 stars 1 forks source link

Code coverage measure #9

Closed AngryMaciek closed 4 years ago

AngryMaciek commented 4 years ago

Is your feature request related to a problem? Please describe. In principle, we should use a mechanism to measure code coverage during the testing. I am not sure it if will work for a snakemake pipeline but we should have it at least for the scripts.

Describe the solution you'd like I never used any external mechanisms to measure the code coverage - open to suggestions.

AngryMaciek commented 4 years ago

Since this is a Snakemake pipeline not a Python package the focus here is more on data processing and less on the classes/attributes/methods themselves. Therefore, at least - for now, we decided to test the output with md5 checksums rather than unit tests of code coverage.

Closing for now, if we ever decide code coverage is neccesary might reopen, @krish8484