fix: add default to path_2_processed arg

zavolanlab / htsinfer

Infer metadata for your downstream analysis straight from your RNA-seq data

Apache License 2.0

9 stars 22 forks source link

Description

Add None to path_2_processed: Optional[Path] as default, to prevent the validation error by Pydantic when initializing the Args class. This caused an issue during the publish docker image step of the CI.

Type of change

[X] Bug fix (non-breaking change which fixes an issue)

Checklist

Please carefully read these items and tick them off if the statements are true or do not apply.

[X] I have performed a self-review of my own code
[X] My code follows the existing coding style, lints and generates no new warnings
[X] I have added type annotations to all function/method signatures, and I have added type annotations for any local variables that are non-trivial, potentially ambiguous or might otherwise benefit from explicit typing.
[X] I have commented my code in hard-to-understand areas
[X] I have added ["Google-style docstrings"] to all new modules, classes, methods/functions or updated previously existing ones
[X] I have added tests that prove my fix is effective or that my feature works
[X] New and existing unit tests pass locally with my changes and I have not reduced the code coverage relative to the previous state
[X] I have updated any sections of the app's documentation that are affected by the proposed changes

If for some reason you are unable to tick off all boxes, please leave a comment explaining the issue you are facing so that we can work on it together.

Codecov Report

Patch coverage: 100.00% and no project coverage change.

Comparison is base (58d7bbf) 99.80% compared to head (32e11f4) 99.80%.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## dev #137 +/- ## ======================================= Coverage 99.80% 99.80% ======================================= Files 12 12 Lines 1039 1039 ======================================= Hits 1037 1037 Misses 2 2 ``` | [Files Changed](https://app.codecov.io/gh/zavolanlab/htsinfer/pull/137?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=zavolanlab) | Coverage Δ | | |---|---|---| | [htsinfer/models.py](https://app.codecov.io/gh/zavolanlab/htsinfer/pull/137?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=zavolanlab#diff-aHRzaW5mZXIvbW9kZWxzLnB5) | `100.00% <100.00%> (ø)` | |

zavolanlab / htsinfer