Implement unit tests for the indicated module. The goal is not only to achieve 100% test coverage, i.e., run each line of code in a given test run, but to test the intended/expected behaviors of each individual method/function separately and comprehensively. Available unit tests for other modules (e.g., htsinfer.py, get_read_layout) can serve as an example.
Describe alternatives you've considered
N/A
Additional context
Note that in order to pass CI checks, coverage checks for the module have been excluded in setup.cfg. Please remove the module from the corresponding config section before filing the pull request.
Is your feature request related to a problem? Please describe.
Currently, comprehensive unit tests are missing for module
htsinfer.get_read_orientation.Describe the solution you'd like
Implement unit tests for the indicated module. The goal is not only to achieve 100% test coverage, i.e., run each line of code in a given test run, but to test the intended/expected behaviors of each individual method/function separately and comprehensively. Available unit tests for other modules (e.g.,
htsinfer.py,get_read_layout) can serve as an example.Describe alternatives you've considered
N/A
Additional context
Note that in order to pass CI checks, coverage checks for the module have been excluded in
setup.cfg. Please remove the module from the corresponding config section before filing the pull request.