Created separate conda env scrnasim-toolz for the tools package
Updated Dockerfile to allow for separate entry points from Nextflow script
Removed nextflow from requirements
Added PR template
Type of change
[X] New feature (non-breaking change which adds functionality)
Checklist
Please carefully read these items and tick them off if the statements are true
or do not apply.
[X] I have performed a self-review of my own code
[X] My code follows the existing coding style, lints and generates no new
warnings
[X] I have added type annotations to all function/method signatures, and I
have added type annotations for any local variables that are non-trivial,
potentially ambiguous or might otherwise benefit from explicit typing.
[X] I have commented my code in hard-to-understand areas
[X] I have added ["Google-style docstrings"] to all new modules, classes,
methods/functions or updated previously existing ones
[X] I have added tests that prove my fix is effective or that my feature
works
[X] New and existing unit tests pass locally with my changes and I have not
reduced the code coverage relative to the previous state
[X] I have updated any sections of the app's documentation that are affected
by the proposed changes
If for some reason you are unable to tick off all boxes, please leave a
comment explaining the issue you are facing so that we can work on it
together.
Description
scrnasim-toolzfor the tools packageType of change
Checklist
Please carefully read these items and tick them off if the statements are true or do not apply.
If for some reason you are unable to tick off all boxes, please leave a comment explaining the issue you are facing so that we can work on it together.