fix: bind input file locations to Singularity

[uniqueg]

• Add bind_paths parameter to SnakemakeExecutor constructor
• Parse input file paths for HTSinfer and ZARP workflows and pass to SnakemakeExecutor bind_paths parameter

Fixes #64

Type of change

Please delete options that are not relevant.

• [x] Bug fix (non-breaking change which fixes an issue)

Checklist

Please carefully read these items and tick them off if the statements are true or do not apply.

• [x] I have performed a self-review of my own code
• [x] My code follows the existing coding style, lints and generates no new warnings
• [x] I have added type annotations to all function/method signatures, and I have added type annotations for any local variables that are non-trivial, potentially ambiguous or might otherwise benefit from explicit typing.
• [x] I have commented my code in hard-to-understand areas
• [x] I have added Google-style docstrings to all new modules, classes, methods/functions or updated previously existing ones
• [x] I have added tests that prove my fix is effective or that my feature works
• [x] New and existing unit tests pass locally with my changes and I have not reduced the code coverage relative to the previous state
• [x] I have updated any sections of the app's documentation that are affected by the proposed changes

If for some reason you are unable to tick off all boxes, please leave a comment explaining the issue you are facing so that we can work on it together.

[codecov[bot]]

Codecov Report

Patch coverage: 100.00% and no project coverage change.

Comparison is base (d5e0578) 100.00% compared to head (61510b6) 100.00%.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## dev #65 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 23 23 Lines 1243 1250 +7 ========================================= + Hits 1243 1250 +7 ``` | [Files Changed](https://app.codecov.io/gh/zavolanlab/zarp-cli/pull/65?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=zavolanlab) | Coverage Δ | | |---|---|---| | [zarp/plugins/sample\_processors/htsinfer.py](https://app.codecov.io/gh/zavolanlab/zarp-cli/pull/65?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=zavolanlab#diff-emFycC9wbHVnaW5zL3NhbXBsZV9wcm9jZXNzb3JzL2h0c2luZmVyLnB5) | `100.00% <100.00%> (ø)` | | | [zarp/runner/zarp\_runner.py](https://app.codecov.io/gh/zavolanlab/zarp-cli/pull/65?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=zavolanlab#diff-emFycC9ydW5uZXIvemFycF9ydW5uZXIucHk=) | `100.00% <100.00%> (ø)` | | | [zarp/snakemake/run.py](https://app.codecov.io/gh/zavolanlab/zarp-cli/pull/65?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=zavolanlab#diff-emFycC9zbmFrZW1ha2UvcnVuLnB5) | `100.00% <100.00%> (ø)` | |

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